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MiR-146a-5p targeting SMAD4 and TRAF6 inhibits adipogenensis through TGF-β and AKT/mTORC1 signal pathways in porcine intramuscular preadipocytes

Journal of Animal Science and Biotechnology volume 12, Article number: 12 (2021) Cite this article

Abstract

Background

Intramuscular fat (IMF) content is a vital parameter for assessing pork quality. Increasing evidence has shown that microRNAs (miRNAs) play an important role in regulating porcine IMF deposition. Here, a novel miRNA implicated in porcine IMF adipogenesis was found, and its effect and regulatory mechanism were further explored with respect to intramuscular preadipocyte proliferation and differentiation.

Results

By porcine adipose tissue miRNA sequencing analysis, we found that miR-146a-5p is a potential regulator of porcine IMF adipogenesis. Further studies showed that miR-146a-5p mimics inhibited porcine intramuscular preadipocyte proliferation and differentiation, while the miR-146a-5p inhibitor promoted cell proliferation and adipogenic differentiation. Mechanistically, miR-146a-5p suppressed cell proliferation by directly targeting SMAD family member 4 (SMAD4) to attenuate TGF-β signaling. Moreover, miR-146a-5p inhibited the differentiation of intramuscular preadipocytes by targeting TNF receptor-associated factor 6 (TRAF6) to weaken the AKT/mTORC1 signaling downstream of the TRAF6 pathway.

Conclusions

MiR-146a-5p targets SMAD4 and TRAF6 to inhibit porcine intramuscular adipogenesis by attenuating TGF-β and AKT/mTORC1 signaling, respectively. These findings provide a novel miRNA biomarker for regulating intramuscular adipogenesis to promote pork quality.

Background

Intramuscular fat (IMF) content is implicated in pork tenderness, flavor, and juiciness, and is an important indicator for assessing pork quality [1, 2]. Therefore, proper ways to increase IMF content and improve pork quality has become an important topic in recent years [3]. The deposition of IMF is achieved through the proliferation and differentiation of intramuscular preadipocytes [4]. The proliferation of preadipocytes is regulated by differential expression of cell cycle regulators, including cyclin-dependent kinases (CDKs), CDK inhibitors (CKIs), and other transcription factors [5]. Similarly, the preadipocyte differentiation process also involves many regulatory factors, including the peroxisome proliferator-activated receptor γ (PPARγ), CCAAT/enhancer binding protein (C/EBP) family, fatty acid binding protein 4 (FABP4), and lipoprotein lipase (LPL) [6]. However, besides the above key genes, many miRNAs identified by RNA-seq are also involved in the regulation of porcine IMF content, and their functions and mechanisms require further study.

miRNAs are small, evolutionarily conserved non-coding RNAs that have an important function in regulating gene expression. miRNAs function generally by binding target genes that match their “seed sequences” to suppress or degrade target gene mRNAs after transcription and coordinate normal processes, including cellular proliferation, differentiation and apoptosis [7, 8]. Increasing evidence has shown that miRNAs, including miR-206 [9], miR-149-5p [10] and miR-204-5p [11], play key roles in preadipocyte proliferation and differentiation. Moreover, many miRNAs are differentially expressed in porcine adipose tissue during different developmental stages and have been studied using transcriptome sequencing technology [12]. We therefore speculated that these miRNAs may be key regulators of porcine IMF deposition through their target genes.

Classical TGF-β/SMAD signaling regulates cell proliferation, differentiation, migration and growth. SMAD4 is an important transmission medium that transduces extracellular signals, including TGF-β and BMP, to the nucleus [13,14,15]. It has been reported in the literature that SMAD4 regulates the proliferation and migration of A549 cells [16], dihydromyricetin inhibits the proliferation of human choriocarcinoma JAR cells via downregulation of SMAD4 expression [17], and miR-224 mediates the proliferation of HCT116 cells by targeting SMAD4 [18]. Although SMAD4 has been discovered and studied in the proliferation of different cell types, it needs to be further explored whether SMAD4 is implicated in proliferation of porcine intramuscular preadipocytes.

TRAF6 is an adapter protein that possesses E3 ubiquitin ligase activity [19] and plays an important role in intracellular signal transduction [20]. For instance, TRAF6 is a direct ubiquitinase of the serine/threonine kinase AKT and promotes AKT phosphorylation and activation [21, 22]. AKT is a node at the junction of many major intracellular signaling pathways [23] and plays an essential role in adipocyte differentiation. Preadipocytes that lack Akt exhibit differentiation defects because they fail to induce PPARγ expression at the beginning of the adipogenesis program [24,25,26]. Furthermore, mTORC1, a major downstream signaling regulator of AKT, is a key regulator of mRNA translation and cell growth [27]. Several studies have found that mTORC1 activity is required for proper preadipocyte differentiation [28,29,30]. However, whether TRAF6 acts as an miRNA target to regulate the activation of the AKT/mTORC1 signaling pathway, thereby affecting porcine intramuscular preadipocyte differentiation, remains unknown.

In this study, based on a published miRNA sequencing analysis of adipose and muscle tissue at four developmental stages of pigs, at one, 30, 90 and 240 days of age [31], we found that miR-146a-5p showed significant expression differences in adipose tissue at all stages, but was not differentially expressed in muscle tissue at a later stage of growth. These findings implying that miR-146a-5p may have a key effect on IMF deposition, and our results reveal that miR-146a-5p inhibits intramuscular preadipocyte proliferation and differentiation by targeting SMAD4 and TRAF6 through TGF-β and AKT/mTORC1 signaling pathways. Thus, miR-146a-5p is a novel key regulator of pig IMF deposition.

Methods

Animal and sample collection

Piglets (3 days old) were provided by the animal experiment animal ranch of Northwest A&F University. According to the regulations of the Animal Protection Committee of Northwest A&F University, all pigs were killed in the slaughterhouse. Dissect the heart, liver, spleen, lung, kidney, longissimus dorsi muscle (LD) and subcutaneous white adipose tissue (SWAT), and rinse with phosphate buffered saline (PBS). The samples used for real-time quantitative PCR (RT-qPCR) were frozen and stored in liquid nitrogen.

Isolation and culture of porcine intramuscular preadipocytes

At 3 days old piglets were sacrificed, the intramuscular preadipocytes in LD were extracted as previously described [32]. Cells were re-suspended in DMEM/F12 and plated at a density 6 × 105 per 60-mm culture dish (Fig. S1A), and cultured in a 5% CO2 incubator at 37 °C. When the cells grow to confluence (Fig. S1C), the medium was changed with adipogenic induction medium, which is the DMEM/F12 supplement with 10% FBS, 100 U/mL penicillin-streptomycin, 0.5 mmol/L IBMX, 1 nmol/L DEX, and 5 ng/mL insulin (IBMX, DEX and insulin were purchased from Sigma).

Transfection of mimics/inhibitor NC and miR-146a-5p mimic/inhibitor

Porcine intramuscular preadipocytes were seeded in 6-well, 12-well, 24-well or 96-well plates. When detecting cell proliferation, miR-146a-5p mimics or mimics negative control (MNC) (Ribobio, China) were transfected (50 nmol/L) when the cell density reached 50–60% (Fig. S1B). During transfection, X-tremeGENE siRNA Transfection Reagent (Roche, USA) was mixed with Opti-MEM medium (Gibco, USA) for 5 min, then the two mixtures were mixed for 20 min and added to the cell culture medium, and the medium was replaced with fresh culture after 12 h. Cells were harvested 24 h after transfection for cell proliferation studies. When transfected with miR-146a-5p inhibitor, the method is the same as above, but the final concentration of miR-146a-5p inhibitor was 100 nmol/L. For the differentiation of preadipocytes, the cells were transfected when the cell density reached 70%. When cells reached confluence after transfection, adipogenic differentiation was induced by switching to differentiation medium.

Total RNA extraction, RNA reverse transcription and RT-qPCR

After obtaining the cells, the cells were lysed with Trizol reagent (TakaRa, Otsu, Japan) and the total RNA in the cells was extracted. The concentration of total RNA was measured by the NanoDrop 2000 (Thermo, Waltham, MA, USA). Then the reverse transcription kit (TakaRa, Otsu, Japan) was used to synthesize cDNA. The specific reverse transcription primers and procedures were used for miRNA inversion. About real-time quantitative PCR, the SYBR green kit was used and three replicates were set up, and then the PCR reaction was performed on the Bio-Rad iQTM5 system. GAPDH was used as the internal reference for all genes for standardized analysis. But when analyzing miR-146a-5p levels, U6 was used as an internal reference. Table 1 shows the primer sequences used for qPCR. The primer sequences used for qPCR were shown in Table 1.

Table 1 Primer sequences used in this study
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Western blots

Cell samples were lysed using radio immunoprecipitation assay (RIPA) buffer (Beyotime, China) supplemented with protease inhibitor (Pierce, WA, USA) and total protein was extracted. The total protein samples were separated by electrophoresis in SDS-polyacrylamide gel. Then transferred it to PVDF membranes (Millipore, Bedford, MA, USA). After blocking the membrane in 5% skim milk for 2 h, the primary antibody was incubated overnight (4 °C) and the secondary antibody was incubated for 1.5 h (4 °C). Protein bands were exposed with chemiluminescent reagents (Millipore, Bedford, MA, USA) and quantified using Image J. Following primary antibodies were used: Cyclin D (1:100; Santa Cruz, USA), Cyclin E (1:100; Santa Cruz, USA), PCNA (1:1000; CST, USA), P21 (1:100; Santa Cruz, USA), C/EBPβ (1:100; Santa Cruz, USA), PPARγ (1:100; Santa Cruz, USA), FABP4 (1:100; Santa Cruz Biotechnology, Dallas, TX, USA), TRAF6 (1:500; Aviva Systems Biology, USA), SMAD4 (1:100; Santa Cruz, USA), β-actin (1:1000; Santa Cruz Biotechnology, Dallas, TX, USA), AKT (1:2000; Cell Signaling Technology, USA), p-AKT (1:2000; Cell Signaling Technology, USA), mTORC1 (1:2000; Cell Signaling Technology, USA), p-mTORC1 (1:2000; Cell Signaling Technology, USA),The secondary antibodies were anti-rabbit, anti-goat and anti-mouse antibodies (1:3000; Santa Cruz Biotechnology, Dallas, TX, USA). The targeted proteins were detected using the Gel Doc XR System (Bio-Rad, Hercules, CA, USA) as the instructions of the manufacturer.

Target prediction and luciferase activity assay

The target genes of miR-146a-5p were predicted with Target-Scan 7.0. For the dual-reporter assay, we constructed a wild-type and mutant psiCHECK-2-reporter vector containing the target genes SMAD4 and TRAF6 3′ UTR region (TongYong, Anhui, China). HEK293T was seeded in a 48-well plate and cotransfected with miRNA mimics or the negative control with psiCHECK-2-SMAD4 (or TRAF6)-reporter vector or mutant vector. After 48 h of transfection, the relative luciferase activity of Renilla compared with firefly was measured.

EDU imaging assay

We used the Cell-Light™ EdU Apollo® 567 In Vitro Imaging Kit and configured the mixed solution according to the instructions. The preadipocytes in the normal growth stage were treated with 50 μmol/L EDU medium for 2 h. After the cells were fixed with 4% paraformaldehyde, they were stained with Apollo reaction solution. Then cell nucleus was stained with Hoechst. Nikon TE2000 microscope (Nikon, Tokyo, Japan) was used to take pictures, and the data was analyzed using Image J.

Cell counting kit 8 (CCK8) analysis

Preadipocytes were seeded to 96-well plate in a number of 4 × 103 cells. Preadipocytes were transfected with miR-146a-5p mimics/inhibitor or mimics/inhibitor negative control with 3 repetitions. After treatment for 24 h we switched the cells to culture medium containing 10% CCK solution for 2 h at 37 °C followed by measuring absorbance at 490 nm.

Flow cytometry

Preadipocytes were seeded in 6- well culture plate at a density of 4 × 105 cells per well. Cells were transfected with miR-146a-5p mimic or inhibitor for 24 h. After washed three times with PBS, cells were fixed with 70% alcohol overnight at − 20 °C followed by being treated with 1 mg/mL RNAase at 37 °C for 40 min, and stained with 50 mg/mL propidium iodide (PI) at 4 °C for 1 h. The samples were detected using a FACS Calibur flow cytometer (Becton Dickinson, Franklin Lakes, NJ, USA). The proliferation index (PI) shows the proportion of mitotic cells among the 10,000 cells examined.

Oil Red O, BODIPY and AdipoRed staining

For Oil Red O staining, cells were fixed in a 4% paraformaldehyde solution for 30 min, induced with 60% Oil Red O for 30 min, and washed three times with PBS, and then the cells were visualized by phase-contrast microscope (IS-Elements software, Nikon ECLIPSE, Tokyo, Japan). Oil Red O was extracted with 100% isopropanol, and its relative concentration was determined by measuring the absorbance at 510 nm. After being fixed in 4% paraformaldehyde solution for 15 min, cells were stained with BODIPY (1 μg/mL; Life Technologies, Carlsbad, CA, USA) or AdipoRed (30 μL/mL; Lonza, USA) for 20 min; the sections were washed with PBS three times for 5 min each. For nuclear visualization, DAPI (4′,6-diamidino-2-phenylindole; Roche) was incubated for 10 min, then the section was rinsed with PBS. After treatment, the sections were observed under fluorescence microscope (Nikon, Tokyo, Japan).

Bioinformatics analysis

The sequences of miRNAs were searched for at miRBase (http://www.mirbase.org/). Sequence alignment using MAGA software. The 3′ UTR sequences of E2F3 and P55PIK were downloaded from NCBI. Target genes of miRNA were predicted by TargetScan 7.0 Human (http://www.targetscan.org).

Statistical analysis

All charts were created using GraphPad Prism 6.0 and the data represent the mean ± SEM. The significance of differences between the groups was assessed using the Student’s t test or one-way analysis (*, P<0.05; **, P<0.01).

Results

MiR-146a-5p is a potential regulator of porcine IMF adipogenesis

To identify miRNAs related to porcine IMF deposition, miRNA sequencing data were analyzed. As shown in the heat map, the levels of miR-146a-5p in the 30 d, 90 d, and 240 d porcine adipose tissue were significantly higher than those in the 0 d piglets (Fig.1a). Moreover, the miR-146a-5p seed sequence in humans, pigs and mice is highly conserved (Fig. 1b). The KEGG pathway analysis predicted that miR-146a-5p is involved in the TGF-β, AKT and mTORC pathways (Fig. 1c), and the GO term analysis suggested that miR-146a-5p can regulate cell proliferation and fat cell differentiation (Fig. 1d). Furthermore, miR-146a-5p is highly expressed in porcine WAT (Fig. 1e). Most importantly, the levels of miR-146a-5p increased first and then decreased in proliferated and differentiated porcine intramuscular preadipocytes, but they showed an upward trend in the late stage of differentiation (Fig. 1f and g).

Fig. 1
figure 1

MiR-146a-5p is a potential regulator of porcine IMF adipogenesis. a The differential expression analysis heat map of miRNA sequencing data. Different colors represented the relative expression. b Comparation of miR-146a-5p seed sequence from pig, mice and human, etc. c KEGG pathway analysis of the miR-146a-5p target genes. d GO term analysis of the miR-146a-5p target genes. e Tissue expression profile of miR-146a-5p in pig. f RT-qPCR was performed to detect the expression of miR-146a-5p in proliferating in porcine intramuscular preadipocytes. g RT-qPCR analysis of miR-146a-5p expression after inducing adipogenic differentiation. Results are representative of the mean ± SEM (n = 3)

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MiR-146a-5p mimics inhibit proliferation of porcine intramuscular preadipocytes

To investigate the effect of miR-146a-5p on the proliferation of porcine intramuscular preadipocytes, the miR-146a-5p mimics and mimics negative control (MNC) were transfected into cells. Compared with the MNC group, the positive cells labeled with EDU and the total number of cells in the mimics group was significantly reduced (P < 0.05) (Fig. 2a-c). In addition, the number of S-phase cells was significantly lower in the mimics group than in the MNC group (P < 0.05), but the number of cells in the G1-phase was significantly higher than that in the MNC group (P < 0.05) (Fig. 2d and e). Furthermore, the miR-146a-5p mimics sharply increased the levels of miR-146a-5p (P < 0.05), significantly decreased the mRNA levels of cyclin B, cyclin D and cyclin E, whereas it apparently increased the mRNA levels of p21 (P < 0.05) (Fig. 2f and g). Similarly, the miR-146a-5p mimics downregulated the protein levels of cyclin D, cyclin E and PCNA (P < 0.05), and P21 protein tended to be upregulated, but did not reach statistical significance (Fig. 2h and i).

Fig. 2
figure 2

MiR-146a-5p mimics inhibit proliferation of porcine intramuscular preadipocytes. a EdU staining assay. Porcine intramuscular preadipocyte in the S-phase were stained with EdU in red, and cell nuclei were dyed with Hoechst in blue. b Quantification ratio of EdU-positive cells/total cells. c CCK-8 analysis after treatment with miR-146a-5p mimics during porcine intramuscular preadipocyte proliferation. d Cell cycle analysis of preadipocyte by flow cytometry. e Statistical results of flow cytometry. f Overexpression efficiency of miR-146a-5p mimics after transfection for 24 h. g RT-qPCR was used to detect the cell cycle genes cyclin B, cyclin D, cyclin E, and p21. h Western blot analysis of cyclin E, cyclin D, PCNA and p21 after transfection with miR-146a-5p mimics. i Protein quantitative analysis of cyclin E, cyclin D, PCNA and p21. Values are expressed as mean ± SEM (n = 3). *, P < 0.05; **, P < 0.01, versus MNC

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MiR-146a-5p inhibitor promotes porcine intramuscular preadipocyte proliferation

To validate the role of miR-146a-5p inhibitor on the proliferation of porcine intramuscular preadipocytes, inhibitor negative control (INC) and miR-146a-5p inhibitors were transfected into porcine intramuscular preadipocytes. The results indicated that knockdown of miR-146a-5p significantly increased the number of EdU-positive cells, S-phase cells and total cells (P < 0.05) (Fig. 3a-e). The inhibitor effectively decreased the levels of miR-146a-5p (P < 0.05) and increased the mRNA levels of cyclin B, cyclin D, and cyclin E, but reduced the level of p21 (P < 0.05) (Fig. 3f and g). Meanwhile, the inhibitor upregulated the protein levels of cyclin D and cyclin E, whereas downregulated the protein level of P21 (P < 0.05) (Fig. 3h and i).

Fig. 3
figure 3

MiR-146a-5p inhibitor promotes porcine intramuscular preadipocyte proliferation. a EdU staining assay. Porcine intramuscular preadipocyte in the S-phase were stained with EdU in red, and cell nuclei were dyed with Hoechst in blue. b Quantification ratio of EdU-positive cells/total cells. c CCK-8 analysis after treatment with miR-146a-5p inhibitor during porcine intramuscular preadipocyte proliferation. d Cell cycle analysis of preadipocyte by flow cytometry. e Statistical results of flow cytometry. f Interference efficiency of miR-146a-5p inhibitor after transfection for 24 h. g RT-qPCR was used to detect the cell cycle genes cyclin B, cyclin D, cyclin E, and p21. h Western blot analysis of cyclin E, cyclin D, PCNA and p21 after transfection with miR-146a-5p inhibitor. i Protein quantitative analysis of cyclin E, cyclin D, PCNA and p21. Values are expressed as the mean ± SEM (n = 3). *, P < 0.05, versus INC

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MiR-146a-5p targeting SMAD4 inhibits the proliferation of porcine intramuscular preadipocytes by the TGF-β signaling pathway

To further explore the regulatory mechanism of miR-146a-5p on porcine intramuscular preadipocyte proliferation, we predicted and verified its target genes and signaling pathways. SMAD4 may be the target gene of miR-146a-5p using TargetScan 7.0 analysis (Fig. 4a and b). The dual-luciferase reporter (DLR) assay results showed that the relative luciferase activity of miR-146a-5p mimics plus SMAD4 WT vector co-treated group was significantly reduced (P < 0.05) (Fig. 4c and d). Next, the rescued experiments were carried out. Compared with the mimics group, the number of EDU-positive cells and the total number of cells in the mimics and SMAD4 overexpression vector co-treatment group markedly increased (P < 0.01), and rescued or even exceeded the NC group level (Fig. 4e-g). Moreover, SMAD4 overexpression restored the mRNA and protein levels of SMAD4 and cell cycle-related genes (P < 0.05) (Fig. 4h-k). In addition, SMAD4 downstream TGF-β signaling was attenuated by mimics, but was rescued upon SMAD4 overexpression (P < 0.05) (Fig. 4j and k).

Fig. 4
figure 4

MiR-146a-5p targeting SMAD4 inhibits the proliferation of porcine intramuscular preadipocytes by the TGF-β signaling pathway. a SMAD4 was predicted to be a target of miR-146a-5p by TargetScan software. b miR-146a-5p and SMAD4 3′ UTR region base complementary pattern diagram. c WT and MUT psiCHECK-2.0-SMAD4 vectors. d Relative luciferase activity of SMAD4 responding to miR-146a-5p mimics. To verify that miR-146a-5p can function by targeting SMAD4, we co-treated cells with miR-146a-5p mimics and SMAD4 overexpression vector (500 ng, 6-well plate). e EdU staining assay. f Quantification ratio of EdU-positive cells/total cells. g CCK-8 analysis. h RT-qPCR was used to detect SMAD4 mRNA expression level. i Cell cycle genes cyclin B, cyclin D, cyclin E, and p21 expression level. j Western blot analysis of cyclin E, cyclin D, PCNA and p21. k Protein quantitative analysis of cyclin E, cyclin D, PCNA and p21. Values are expressed as the mean ± SEM (n = 3). *, P < 0.05; **, P < 0.01; ***, P < 0.001, versus NC

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MiR-146a-5p mimics suppress porcine intramuscular preadipocyte differentiation

To study the effects of miR-146a-5p mimics on the differentiation of porcine intramuscular preadipocytes, we treated cells with MNC and miR-146a-5p mimics, and then induced adipogenic differentiation for 6 days. Compared with the MNC group, the lipid droplets produced by intramuscular adipocytes apparently decreased in the mimics group, and the triglyceride (TG) content also significantly decreased (P < 0.05) (Fig. 5a-d). The expression of miR-146a-5p was significantly increased in differentiated intramuscular adipocytes (P < 0.05) (Fig. 5e). However, the mRNA and protein levels of C/EBPβ, PPARγ and FABP4 were both markedly decreased (P < 0.05) (Fig. 5f-h).

Fig. 5
figure 5

MiR-146a-5p mimics suppresses porcine intramuscular preadipocyte differentiation. Porcine intramuscular preadipocyte were treated with miR-146a-5p mimics to induce differentiation on the 6th day. a, b Bodipy or AdipoRed staining was performed on lipid droplets. c White light field and oil red O stained lipid droplets. d After extracting oil red O with isopropanol, the OD value was detected, 510 nm. e Overexpression efficiency of miR-146a-5p mimics after transfection for 6 d. f RT-qPCR was used to detect the adipogenesis genes C/EBPβ, PPARγ, and FABP4. g Western blot analysis of C/EBPβ, PPARγ, and FABP4 after transfection with miR-146a-5p mimics. h Protein quantitative analysis of g. Values are expressed as the mean ± SE (n = 3). *, P < 0.05, versus MNC

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MiR-146a-5p inhibitor accelerates porcine intramuscular preadipocyte differentiation

To further validate the role of miR-146a-5p in the differentiation of porcine intramuscular preadipocytes, we carried out the experiments of INC and inhibitor treatment on the cells. Compared with the INC group, the lipid droplets apparently accumulated in intramuscular adipocytes, and the TG content also significantly increased (P < 0.05) (Fig. 6a-d). Inhibitor significantly decreased the levels of miR-146a-5p (Fig. 6e), but markedly increased the mRNA levels of C/EBPβ, PPARγ and FABP4 (P < 0.05) (Fig. 6f). Meanwhile the protein levels of C/EBPβ and PPARγ significantly increased in the treatment group (P < 0.05) (Fig. 6g and h).

Fig. 6
figure 6

MiR-146a-5p inhibitor accelerates porcine intramuscular preadipocyte differentiation. a Porcine intramuscular preadipocyte were treated with miR-146a-5p inhibitor to induce differentiation on the 6th day. a, b Bodipy or AdipoRed staining was performed on lipid droplets. c White light field and oil red O stained lipid droplets. d After extracting oil red O with isopropanol, the OD value (510 nm) was detected. e Interference efficiency of miR-146a-5p inhibitor after transfection for 6d. f RT-qPCR was used to detect the adipogenesis genes C/EBPβ, PPARγ, and FABP4. g Western blot analysis of C/EBPβ, PPARγ, and FABP4 after transfection with miR-146a-5p inhibitor. h Protein quantitative analysis of g. Values are expressed as the mean ± SE (n = 3). *, P < 0.05; **, P < 0.01, versus INC

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MiR-146a-5p targeting TRAF6 inhibits the differentiation of porcine intramuscular preadipocytes via the AKT/mTORC1 signaling pathway

To further investigate the mechanism by which miR-146a-5p regulates the differentiation of intramuscular preadipocytes, we explored its target genes and signaling pathways. The online software predicted that miR-146a-5p could be combined with the TRAF6 3′ UTR (Fig. 7a and b). The DLR assay results showed that the relative luciferase activity of miR-146a-5p mimics and TRAF6 WT vector co-treated group was significantly reduced (P < 0.05) (Fig. 7c and d). The rescued experiments were performed. Compared with the mimics group, the lipid droplets and TG content in the TRAF6 overexpression vector plus mimics co-treated group significantly increased and rescued to the NC group (P < 0.05) (Fig. 7e-h). Moreover, TRAF6 overexpression rescued the mRNA and protein levels of TRAF6 and adipogenic related genes (P < 0.05) (Fig. 7i-l). AKT/mTORC1 as the important downstream signaling pathway of TRAF6, their phosphorylation levels were significantly decreased in mimics group but increased in co-treated group (P < 0.01) (Fig. 7m and n).

Fig. 7
figure 7

MiR-146a-5p targeting TRAF6 inhibits the differentiation of porcine intramuscular preadipocytes via the AKT/mTORC1 signaling pathway. a TRAF6 was predicted to be a target of miR-146a-5p by TargetScan software. b miR-146a-5p and TRAF6 3′ UTR region base complementary pattern diagram. c WT and MUT psiCHECK-2.0-TRAF6 vectors. d Relative luciferase activity of TRAF6 responding to miR-146a-5p mimics. To verify that miR-146a-5p can function by targeting TRAF6, we co-treated cells with miR-146a-5p mimics and TRAF6 overexpression vector (500 ng per hole, 6-well plate). e, f Bodipy or AdipoRed staining was performed on lipid droplets. g White light field and oil red O stained lipid droplets. h After extracting oil red O with isopropanol, the OD value (510 nm) was detected. i, j RT-qPCR was used to detect the TRAF6 and adipogenesis genes C/EBPβ, PPARγ, and FABP4. k Western blot analysis of TRAF6, C/EBPβ, PPARγ, and FABP4. l Protein quantitative analysis of k. m Western blot analysis of AKT, p-AKT, mTORC1, and p-mTORC1. n Protein quantitative analysis of m. Values are expressed as the mean ± SE (n = 3). *, P < 0.05; **, P < 0.01, versus NC

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Discussion

As a member of the non-coding RNA family, miRNAs have a crucial regulatory role in preadipocyte adipogenesis. Based on bioinformatics analysis of miRNA sequencing data, we found that miR-146a-5p was differentially expressed during SWAT deposition in pigs. Further study showed that the miR-146a-5p sequence was highly conserved, and its function was involved in fat cell proliferation and differentiation by TGF-β and AKT/mTORC1 signal pathways using KEGG and GO analysis. Moreover, miR-146a-5p was highly expressed in porcine white adipose tissue (WAT), and its expression levels first increase and then decrease in proliferated and differentiated porcine intramuscular preadipocytes. Based on the above analysis, we speculated that miR-146a-5p is also implicated in IMF deposition.

It is vital to improve pork quality by controlling the IMF content during pig production. The present study demonstrated that miR-146a-5p plays a crucial role in regulating porcine IMF adipogenesis. miR-146a-5p targets SMAD4 and inhibits porcine intramuscular preadipocyte proliferation by attenuating TGF-β signaling and also targets TRAF6 to repress differentiation by weakening AKT/mTORC1 signaling. These findings indicate that miR-146a-5p could be a novel negative regulator of porcine IMF deposition.

IMF deposition depends on the proliferation and differentiation of intramuscular preadipocytes. Our results confirmed that miR-146a-5p inhibited intramuscular preadipocyte proliferation by reducing the number of S-phase cells and downregulating the mRNA and protein levels of cyclin B, cyclin D, cyclin E and PCNA, and upregulating the mRNA and protein levels of p21. Previous studies revealed that miR-146a-5p promotes lung cancer cell proliferation by targeting claudin-12 [33], and overexpression of miR-146 or knockout of its target gene, notch 1, inhibits mouse neural stem cell proliferation in serum-free medium [34]. Therefore, miR-146a-5p differentially modulates the proliferation of different cell types. Generally, genes and miRNAs have opposite effects on cell proliferation and differentiation. Recent studies have shown that miR-664-5p promotes myoblast proliferation and inhibits myoblast differentiation [35], and miR-429 accelerates proliferation of porcine preadipocytes and represses adipogenic differentiation [36]. Interestingly, in this study, miR-146a-5p repressed both the proliferation and differentiation of intramuscular preadipocytes. Studies have indicated that miR-483 inhibits the proliferation and differentiation of bovine myoblasts [37], and miR-342-5p has been found to restrict osteoblast proliferation and differentiation by inhibiting Bmp7 expression [38]. Therefore, our results are reasonable, due to the complexity of intramuscular preadipocyte biological processes that are regulated by miRNAs.

Generally, miRNAs regulate different biological processes in the same cell through different target genes. Therefore, we predicted the target genes of miR-146a-5p that are involved in cell proliferation and adipogenic differentiation, respectively. During the proliferation phase, we predicted that SMAD4 was the target gene of miR-146a-5p. Recent studies have shown that miR-145-5p inhibits ovarian epithelial cancer cell proliferation by targeting SMAD4 [39], and miR-663a overexpression suppresses hepatic stellate cell proliferation by downregulating SMAD4 levels [40]. Based on the above results, SMAD4 functions mostly as a positive regulator of cell proliferation. Moreover, the SMAD4 and TGF-β signaling pathways play important roles in miRNA regulation of cell proliferation [41, 42]. Notably, miR-183 promotes preadipocyte adipogenesis by suppressing SMAD4 expression in goats [43], and myostatin/SMAD4 signaling inhibits 3T3-L1 cell differentiation [44]. These findings demonstrate that the effects of SMAD4 on adipocyte differentiation vary in different cell types. However, in our study, SMAD4 was not identified as a target gene of miR-146a-5p during the differentiation phase of porcine intramuscular preadipocytes (Fig. S2A and B). Here, we revealed that miR-146a-5p is a novel miRNA that targets SMAD4 to repress porcine intramuscular preadipocyte proliferation via the TGF-β signaling pathway.

Furthermore, we confirmed through TargetScan 7.0 analysis, luciferase activity assay, and rescue experiments that during porcine intramuscular preadipocyte adipogenic differentiation, the target gene of miR-146a-5p is TRAF6. As expected, miR-146a-5p targeted TRAF6 during cell differentiation, but not during proliferation (Fig. S2C and D). TRAF6 is a signal transduction factor that connects cell surface receptors with intracellular signal proteins. In addition to the inflammatory immune response, TRAF6 also regulates cell differentiation and survival [45]. Previous studies have shown that inhibiting the CD40-TRAF6 interaction induces obesity by improving glucose tolerance and reducing the accumulation of immune cells into adipose tissue [46]. Moreover, green tea extracts reduced the adipose tissue weight of obese mice by reducing TRAF6 expression [47]. Interestingly, a significant reduction in wet weight and adipocyte hypertrophy was observe in epididymal WAT of adipocyte-specific TRAF6-KO mice on a high fat diet (HFD), which suggests TRAF6 inhibition in adipocytes could relieve the obesity induced by a HFD [19]. Therefore, inhibiting TRAF6 expression reduce the accumulation of fat to relieve obesity. However, it is not clear whether inhibiting TRAF6 to prevent obesity is caused by affecting adipocyte differentiation. Notably, AKT/mTORC1 signaling, is downstream of TRAF6, is indispensable in the preadipocyte differentiation process [21, 48, 49]. In addition, the process of adipogenesis is often accompanied by cell inflammation. In our study, when the adipogenesis of porcine intramuscular preadipocyte was inhibited, the inflammatory factor NF-κB and its phosphorylation levels were also downregulated, and the adipogenic ability and inflammation were restored after the addition of the TRAF6 overexpression vector (Fig. S3A and B). In general, we found that miR-146a-5p targets TRAF6 to inhibit porcine intramuscular preadipocyte differentiation through regulating the AKT/mTORC1 signaling pathway.

Conclusions

In conclusion, miR-146a-5p targets SMAD4 to inhibit porcine intramuscular preadipocyte proliferation through the TGF-β signaling pathway, and miR-146a-5p also targets TRAF6 to repress adipogenic differentiation via the AKT/mTORC1 signaling pathway (Fig. 8). These findings provide a novel miRNA biomarker for modulating IMF content to enhance pork quality and help us to better understand the role and regulatory mechanism of miRNAs in IMF adipogenesis.

Fig. 8
figure 8

A model depicting the role of miR-146a-5p in regulating porcine IMF adipogenesis. The intramuscular preadipocytes are derived from the pig’s longest dorsal muscle. On the one hand, miR-146a-5p targets SMAD4 mRNA, inhibits the formation of signal transduction factors, inhibits TGF-β signal transmission into the nucleus, and inhibits cell proliferation by inhibiting cell cycle related genes. On the other hand, miR-146a-5p directly targets TRAF6 mRNA to inhibit its translation and inhibits adipogenesis gene expression through the AKT/mTORC1 signaling pathway, thereby inhibiting adipogenesis

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Availability of data and materials

All data generated or analyzed during this study are available from the corresponding author by request.

Abbreviations

IMF:

Intramuscular fat

miRNAs:

MicroRNAs

SMAD4:

SMAD family member 4

TRAF6:

TNF receptor associated factor 6

WAT:

White adipose tissue

CDKs:

Cyclin-dependent kinases

CKIs:

CDK inhibitors

PPARγ:

Peroxisome proliferator-activated receptor γ

C/EBP:

CCAAT/enhancer binding protein

FABP4:

Fatty acid binding protein 4

LPL:

Lipoprotein lipase

LD:

Longissimus dorsi

SWAT:

Subcutaneous white adipose tissue

PBS:

Phosphate buffer saline

RT-qPCR:

Real-time quantitative PCR

MNC:

Mimics negative control

INC:

Inhibitor negative control

DLR:

Dual-luciferase reporter

TG:

Triglycerides

PI:

Propidium iodide

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Acknowledgments

We thank all the members of the Animal Fat Deposition and Muscle Development Laboratory of the College of Animal Science and Technology, Northwest A&F University who make efforts to these experiments. Zhang Que especially wishes to thank the support and encouragement of Ren Fa.

Funding

This work was supported by grants from the National Natural Science Foundation (31872979, 31572366), the National Key Research and Development Program of China (2017YFD0502002), and the National Basic Research Programs of China (2015CB943102).

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Author notes

  1. Que Zhang and Rui Cai contributed equally to this work.

Authors and Affiliations

  1. Laboratory of Animal Fat Deposition and Muscle Development, College of Animal Science and Technology, Northwest A&F University, Yangling, 712100, Shaanxi, China

    Que Zhang, Rui Cai, Guorong Tang, Wanrong Zhang & Weijun Pang

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Contributions

Zhang Que, Cai Rui, Tang Guorong, Zhang Wanrong conducted the experiment; Zhang Que and Cai Rui collected and analyzed the data; Tang Guorong, Zhang Wanrong, and Pang Weijun helped with the discussion; Zhang Que, Cai Rui and Pang Weijun designed the experiment; Zhang Que, Cai Rui and Pang Weijun wrote and revised the manuscript; The authors read and approved the final manuscript.

Corresponding author

Correspondence to Weijun Pang.

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Ethics approval and consent to participate

All experimental procedures were performed according to the Guide for Northwest A&F University Animal Care Committee. The experimental protocol was approved by the Departmental Animal Ethics Committee of Northwest A&F University (14-233, 10 December 2014). As suggested by the animal welfare protocol, all efforts were made to reduce animal suffering and to use only the number of animals required to produce dependable scientific data.

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Competing interests

The authors have declared no conflict of interest.

Supplementary Information

Additional file 1: Figure S1.

Porcine intramuscular preadipocytes of different densities. A, white light field of newly seeded porcine intramuscular preadipocyte. B, white light field of porcine intramuscular preadipocyte which the density reached 50–60%. C, white light field of porcine intramuscular preadipocyte which the density reached 90–100%.

Additional file 2: Figure S2.

The expression of TRAF6 and SMAD4 during the proliferation and differentiation of porcine intramuscular preadipocytes. A, western blot analysis of SMAD4 in differentiated porcine intramuscular adipocytes which transfected with miR-146a-5p mimics. B, protein quantitative analysis of A. C, western blot analysis of TRAF6 in proliferation porcine intramuscular adipocytes which transfected with miR-146a-5p mimics. D, protein quantitative analysis of C. Values are expressed as mean ± SEM (n = 3).

Additional file 3: Figure S3.

The protein levels of NF-κB and p-NF-κB. A, western blot analysis of NF-κB and p-NF-κB in differentiated porcine intramuscular adipocytes. B, protein quantitative analysis of A. Values are expressed as mean ± SEM (n = 3). *, P < 0.05; **, P < 0.01, versus MNC.

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Zhang, Q., Cai, R., Tang, G. et al. MiR-146a-5p targeting SMAD4 and TRAF6 inhibits adipogenensis through TGF-β and AKT/mTORC1 signal pathways in porcine intramuscular preadipocytes. J Animal Sci Biotechnol 12, 12 (2021). https://doi.org/10.1186/s40104-020-00525-3

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Journal of Animal Science and Biotechnology

ISSN: 2049-1891