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Table 1 Candidate regions and genes detected using all methods

From: Genomic signatures of selection, local adaptation and production type characterisation of East Adriatic sheep breeds

Region

Chr

Position, bpa

Length, Mb

Methods

Genes

1

2

27,846,647–29,059,562

1.213

CLR-IHS-NSL

WNK2, SUSD3, ECM2, ASPN, OMD, OGN, NOL8, W5PEV5

2

2

30,200,000–31,190,000

0.990

NSL-CLR

*

3

2

121,400,000–123,491,237

2.091

ALL

ZSWIM2, FAM171B, ZC3H15, W5Q575, FSIP2

4

3

39,840,000–40,930,000

1.090

NSL-IHS

ETAA1

5

4

68,150,000–69,110,000

0.960

IHS-ROHS

TAX1BP1, EVX1, W5PII1, HOXA10, HOXA9, W5PJ00, HOXA6, HOXA4, HOXA3, HOXA2, W5PJE3

6

6

24,035,512–25,350,000

1.314

CLR-IHS-NSL

EMCN, C6H4orf54

7

6

32,870,000–40,660,000

7.790

IHS-ROHS-CLR

CCSER1, TIGD2, FAM13A, PIGY, MED28, FAM184B, LCORL, W5P3G4, KCNIP4

8

6

112,846,266–116,882,460

4.036

CLR-ROHS

W5PDR8, SORCS2, W5PQN1, AFAP1, ABLIM2, W5PUD5, GRK4, MFSD10, SH3BP2, FAM193A, RNF4, W5Q0Q8, POLN, W5Q1Y2, TACC3, W5Q3F5, LOC101104663, LOC101105412, GAK, W5Q513, W5Q5J9

9

7

71,934,333–73,092,556

1.158

CLR-IHS-NSL

W5QJ23, SGPP1

10

8

60,900,000–61,880,000

0.980

NSL-IHS

MTFR2, MAP7

11

8

62,319,974–63,470,000

1.150

CLR-IHS-NSL

LOC101113683, W5NRH7, NHSL1

12

13

484,42,121–50,598,845

2.157

CLR-IHS-ROHS

RNF24

13

13

50,563,961–51,826,354

1.262

CLR-ROHS

ADAM33

14

16

68,890,399–71,643,038

2.753

NSL-CLR

W5P6Z2, CEP72, BRD9, W5Q3L2, W5Q3M4, W5Q3S1, W5Q4G2

15

17

69,010,000–70,000,000

0.990

NSL-CLR

W5P400, SMTN, RNF185, PIK3IP1, SFI1, PRR14L, DEPDC5

16

21

41,901,704–42,960,000

1.058

CLR-IHS-NSL

GPR137, CCDC88B, RPS6KA4, SLC22A11, NRXN2, MAP4K2, W5PK24, MEN1, CDC42BPG, NAALADL1, ZFPL1, TMEM262, FAU, MRPL49, SYVN1, SLC22A20P

17

22

49,880,000–50,810,000

0.930

IHS-CLR

W5Q425, CFAP46, W5Q8X7, KNDC1, W5QB54, CALY

18

23

25,350,000–26,730,000

1.380

CLR-IHS-NSL

RNF138, RNF125, DSG2, DSG3, DSG4, DSG1, DSC1, DSC2, LOC101116442

19

25

6,540,000–8,070,000

1.530

NSL-IHS

W5NZP4, IRF2BP2, W5NZU5, RBM34

  1. aStart and end position of the genomic region
  2. * No candidate genes found