Fig. 4

SV-based GWAS. A Schematic diagram of Large White × Min pig resource population. The numerals on the top of the pig image represent the number of samples, and the numerals on the right represent the range of sequencing depth. B–F Manhattan and quantumquantum (QQ) plots of associated SVs for carcass length (B), body length (C), body height (D), cannon circumference (E), and bone rate (F). G and H Manhattan plot of five carcass phenotypes of significant loci at 15–45 Mb on chromosome 7 with corresponding protein-coding genes. I The result of genome coverage visualization for FKBP5 intron region (chr7:31,539,932–31,541,378). The left vertical coordinate shows the insert size of the reads, and the right vertical coordinate shows the genome coverage. The black dotted line marks the location of DEL. J Electropherogram of the DEL in the FKBP5 intronic region. Electropherogram showing the results of PCR amplification for the Large White and Min pig. The size of electrophoretic bands was indicated with TaKaRa DL2000. K GWAS for bone weight in the front, middle, and hind sections of pig carcass. The dotted line represents the segmentation position of the pig carcass. The genes closest to the most significant loci are labeled above each phenotype, with Arabic numerals representing the number of significant SV loci for each phenotype. L GWAS for seven pig skeletal phenotypes. The description of this figure is consistent with K