Fig. 3
Position effect estimation and FST screening. A Distribution of the location per SV type in the genome. The x-axis is the genomic positions and the y-axis is the number of SVs. B Proportion of effects predicted for each SV type. Predicted effects based on SV distribution locations in the pig genome were, in order, "MODIFIER", "LOW", "MODERATE", and "HIGH". C Manhattan plot based on Weir and Cockerham's fixed index (FST) statistics. The nearest gene of the SV locus with the highest FST value was marked on each chromosome. D GO and E KEGG enrichment analysis based on the top 5% of FST loci overlapping genes. The font size of GO terms and KEGG pathways correlates with the number of enriched genes