Evaluating the potential of (epi)genotype-by-low pass nanopore sequencing in dairy cattle: a study on direct genomic value and methylation analysis

Table 1 Summary information for the samples sequenced including kit, sequencing depth, genome coverage and number of variants detected after filtering

Sample	Kit	Sequencing depth	Coverage	Number of variants
Sample 1	LSK109	0.36	27	69,700
Sample 2	LSK109	0.51	36	139,412
Sample 3	LSK109	0.41	29	84,872
Sample 5	LSK109	0.54	37	143,414
Sample 6	LSK109	0.54	37	151,828
Sample 8	LSK109	0.61	41	169,916
Sample 9	LSK109	0.45	32	108,916
Sample 10	LSK109	1.04	58	495,019
Sample 11	LSK109	0.88	53	361,627
Sample 12	LSK109	1.07	60	490,223
Sample 13	Q20	0.41	29	115,022
Sample 14	Q20	0.30	22	65,840
Sample 15	Q20	0.38	27	93,316
Sample 16	Q20	0.31	22	67,232
Sample 17	Q20	0.33	24	76,340
Sample 18	Q20	0.36	26	91,323
Sample 19	Q20	0.86	49	419,787
Sample 20	Q20	0.47	32	145,412
Sample 21	Q20	0.74	44	321,066
Sample 22	Q20	0.31	22	74,607
Sample 23	Q20	0.49	30	140,729
Sample 24	Q20	0.38	26	94,729
Sample 25	LSK114	2.43	82	1,924,878
Sample 26	LSK114	2.10	76	1,533,807
Sample 27	LSK114	1.87	73	1,311,229
Sample 28	LSK114	1.92	73	1,375,101
Sample 29	LSK114	1.78	71	1,246,664
Sample 30	LSK114	2.93	87	2,420,455

ISSN: 2049-1891