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Table 2 Summary of key gene and metabolite functions in the mGWAS

From: Serum metabolic profile and metabolome genome-wide association study in chicken

Gene name

SNP (Ref/Alt)

Metabolite name1

Metabolite content in different genotypes (log10, mean ± SD)

Gene and metabolite function description

 TDH

3:107,175,865 (T/C)

Glycine

TT: 15.081 ± 0.477

Mitochondrial threonine dehydrogenase (TDH) enzyme to catabolize threonine into glycine and acetyl-CoA in mouse ES cells [48];

TC/CT: 14.733 ± 0.419

TDH catalyzes the conversion of 2-amino-3-oxobutyrate to acetyl CoA and glycine [49];

CC: 14.600 ± 0.416

 

 AASS

1:23,005,471 (A/T)

Homoarginine

AA: 18.664 ± 0.483

Synthesis of L-homoarginine (hArg) from Arg and L-lysine in animals and humans [50];

AT/TA: 18.216 ± 0.406

AASS catalyzes the first two steps in the mammalian lysine degradation pathway;

TT: 18.042 ± 0.807

 

 ABCB1

2:20,748,311 (G/A)

PA 37:10

GG: 12.528 ± 0.731

ABC transporter protein is a lipid transporter protein [51];

GA/AG: 13.045 ± 0.723

ABCB1 transports phospholipids [52];

AA: 13.834 ± 0.878

 

1-Hexadecanoyl-2-(9Z-octadecenoyl)-sn-glycero-3-phosphoserine (PC(16:0/18:1(9Z)))

GG: 16.868 ± 0.510

 

GA/AG: 17.074 ± 0.496

 

AA: 17.444 ± 0.469

 

CD36

1:11,301,220 (T/C)

Cer 36:3 (a)

TT: 14.447 ± 0.709

Cer 36:3 is a ceramide, members of the class of compounds known as sphingolipids;

TC/CT: 15.143 ± 0.522

CD36 is a number of key proteins involved in fatty acid uptake [53];

CC: 15.225 ± 0.585

 

Cer 36:3 (c)

TT: 15.723 ± 0.452

 

TC/CT: 16.160 ± 0.380

 

CC: 16.199 ± 0.475

 

1:11,358,208 (G/A)

Cer-NS d36:3

GG: 13.856 ± 0.647

 

GA/AG: 14.579 ± 0.473

 

AA: 14.734 ± 0.492

 

1:11,370,522 (A/C)

Cer-NP t19:1/14:1

AA: 11.926 ± 1.069

 

AC/CA: 12.801 ± 0.815

 

CC: 12.979 ± 0.774

 

 UGT1A1

7:5,826,779 (C/T)

Biliverdin (a)

CC: 16.607 ± 0.695

UGT1A1 encodes an enzyme with bilirubin glucuronidating activity;

CT/TC: 15.991 ± 0.601

Bilirubin is derived from biliverdin [54]

TT: 15.898 ± 0.543

 

Biliverdin (b)

CC: 14.646 ± 0.410

 

CT/TC: 13.961 ± 0.453

 

TT: 13.746 ± 0.519

 
  1. 1The letters a, b and c following the metabolite names represent the 3 detection modes: T3-pos, T3-neg and Amide-pos, respectively