From: Serum metabolic profile and metabolome genome-wide association study in chicken
Gene name | SNP (Ref/Alt) | Metabolite name1 | Metabolite content in different genotypes (log10, mean ± SD) | Gene and metabolite function description |
---|---|---|---|---|
 TDH | 3:107,175,865 (T/C) | Glycine | TT: 15.081 ± 0.477 | Mitochondrial threonine dehydrogenase (TDH) enzyme to catabolize threonine into glycine and acetyl-CoA in mouse ES cells [48]; |
TC/CT: 14.733 ± 0.419 | TDH catalyzes the conversion of 2-amino-3-oxobutyrate to acetyl CoA and glycine [49]; | |||
CC: 14.600 ± 0.416 |  | |||
 AASS | 1:23,005,471 (A/T) | Homoarginine | AA: 18.664 ± 0.483 | Synthesis of L-homoarginine (hArg) from Arg and L-lysine in animals and humans [50]; |
AT/TA: 18.216 ± 0.406 | AASS catalyzes the first two steps in the mammalian lysine degradation pathway; | |||
TT: 18.042 ± 0.807 |  | |||
 ABCB1 | 2:20,748,311 (G/A) | PA 37:10 | GG: 12.528 ± 0.731 | ABC transporter protein is a lipid transporter protein [51]; |
GA/AG: 13.045 ± 0.723 | ABCB1 transports phospholipids [52]; | |||
AA: 13.834 ± 0.878 |  | |||
1-Hexadecanoyl-2-(9Z-octadecenoyl)-sn-glycero-3-phosphoserine (PC(16:0/18:1(9Z))) | GG: 16.868 ± 0.510 |  | ||
GA/AG: 17.074 ± 0.496 |  | |||
AA: 17.444 ± 0.469 |  | |||
CD36 | 1:11,301,220 (T/C) | Cer 36:3 (a) | TT: 14.447 ± 0.709 | Cer 36:3 is a ceramide, members of the class of compounds known as sphingolipids; |
TC/CT: 15.143 ± 0.522 | CD36 is a number of key proteins involved in fatty acid uptake [53]; | |||
CC: 15.225 ± 0.585 |  | |||
Cer 36:3 (c) | TT: 15.723 ± 0.452 |  | ||
TC/CT: 16.160 ± 0.380 |  | |||
CC: 16.199 ± 0.475 |  | |||
1:11,358,208 (G/A) | Cer-NS d36:3 | GG: 13.856 ± 0.647 |  | |
GA/AG: 14.579 ± 0.473 |  | |||
AA: 14.734 ± 0.492 |  | |||
1:11,370,522 (A/C) | Cer-NP t19:1/14:1 | AA: 11.926 ± 1.069 |  | |
AC/CA: 12.801 ± 0.815 |  | |||
CC: 12.979 ± 0.774 |  | |||
 UGT1A1 | 7:5,826,779 (C/T) | Biliverdin (a) | CC: 16.607 ± 0.695 | UGT1A1 encodes an enzyme with bilirubin glucuronidating activity; |
CT/TC: 15.991 ± 0.601 | Bilirubin is derived from biliverdin [54] | |||
TT: 15.898 ± 0.543 |  | |||
Biliverdin (b) | CC: 14.646 ± 0.410 |  | ||
CT/TC: 13.961 ± 0.453 |  | |||
TT: 13.746 ± 0.519 |  |