| | Genomic inbreeding | Genealogical inbreeding |
---|
| Mean | FRZ3 | FRZ6 | FRZ9 | FG | FH | FHOM | F3 | F6 | F9 | F | Fa_Bal | AHC | Fa_Kal | Fnew_Kal |
---|
FRZ | 0.17 | 0.85a | 0.94a | 0.97a | 0.41 | 0.26 | 0.98a | 0.59a | 0.68a | 0.78a | 0.79a | 0.4 | 0.38 | 0.72a | 0.61a |
FRZ3 | 0.05 | | 0.94a | 0.91a | 0.67a | 0.52 | 0.84a | 0.75a | 0.77a | 0.75a | 0.75a | 0.15 | 0.13 | 0.55 | 0.75a |
FRZ6 | 0.09 | | | 0.99a | 0.56a | 0.39 | 0.93a | 0.68a | 0.74a | 0.78a | 0.78a | 0.28 | 0.25 | 0.65a | 0.70a |
FRZ9 | 0.11 | | | | 0.51 | 0.34 | 0.95a | 0.64a | 0.72a | 0.78a | 0.78a | 0.32 | 0.29 | 0.68a | 0.66a |
FG | 0.06 | | | | | 0.83a | 0.42 | 0.74a | 0.68a | 0.45 | 0.46 | −0.31 | −0.32 | 0.13 | 0.73a |
FH | 0.05 | | | | | | 0.26 | 0.79a | 0.71a | 0.49 | 0.42 | −0.43 | −0.46 | 0.03 | 0.77a |
FHOM | 0.05 | | | | | | | 0.58a | 0.67a | 0.76a | 0.78a | 0.39 | 0.37 | 0.71a | 0.60a |
- Mean values are for different genomic-based inbreeding coefficient estimations of the PRE genotyped animals; Pearson correlations within genomic inbreeding coefficients (left part) and between genomic and pedigree-based inbreeding coefficient estimations (right part).aSignificant according to Watson-Haigh et al. [45]. Standard means errors were lower than 0.0005. ZooROH approach genomic inbreeding coefficient for all generations and 3, 6, and 9 generations (FRZ, FRZ3, FRZ6, FRZ9, respectively), genomic inbreeding based on the autozygosity (the matrix diagonal) using genomic data (FG, matrix G according to VanRaden [17]), and genomic and pedigree data (FH, matrix H according to Martini et al. [18]), inbreeding coefficient using Plink (FHOM), inbreeding coefficients at 3rd, 6th, and 9th generations (F3, F6 and F9, respectively), classical inbreeding coefficient (F), ancestral Ballou inbreeding coefficient (Fa_Bal), ancestral history coefficient (AHC), ancestral Kalinowski inbreeding coefficient (Fa_Kal) and new Kalinowski inbreeding coefficient (Fnew_Kal)