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Table 3 Pearson’s correlations within genomic and between genomic and pedigree-based inbreeding coefficient estimations for genotyped animals

From: Fine-tuning genomic and pedigree inbreeding rates in equine population with a deep and reliable stud book: the case of the Pura Raza Española horse

  

Genomic inbreeding

Genealogical inbreeding

 

Mean

FRZ3

FRZ6

FRZ9

FG

FH

FHOM

F3

F6

F9

F

Fa_Bal

AHC

Fa_Kal

Fnew_Kal

FRZ

0.17

0.85a

0.94a

0.97a

0.41

0.26

0.98a

0.59a

0.68a

0.78a

0.79a

0.4

0.38

0.72a

0.61a

FRZ3

0.05

 

0.94a

0.91a

0.67a

0.52

0.84a

0.75a

0.77a

0.75a

0.75a

0.15

0.13

0.55

0.75a

FRZ6

0.09

  

0.99a

0.56a

0.39

0.93a

0.68a

0.74a

0.78a

0.78a

0.28

0.25

0.65a

0.70a

FRZ9

0.11

   

0.51

0.34

0.95a

0.64a

0.72a

0.78a

0.78a

0.32

0.29

0.68a

0.66a

FG

0.06

    

0.83a

0.42

0.74a

0.68a

0.45

0.46

−0.31

−0.32

0.13

0.73a

FH

0.05

     

0.26

0.79a

0.71a

0.49

0.42

−0.43

−0.46

0.03

0.77a

FHOM

0.05

      

0.58a

0.67a

0.76a

0.78a

0.39

0.37

0.71a

0.60a

  1. Mean values are for different genomic-based inbreeding coefficient estimations of the PRE genotyped animals; Pearson correlations within genomic inbreeding coefficients (left part) and between genomic and pedigree-based inbreeding coefficient estimations (right part).aSignificant according to Watson-Haigh et al. [45]. Standard means errors were lower than 0.0005. ZooROH approach genomic inbreeding coefficient for all generations and 3, 6, and 9 generations (FRZ, FRZ3, FRZ6, FRZ9, respectively), genomic inbreeding based on the autozygosity (the matrix diagonal) using genomic data (FG, matrix G according to VanRaden [17]), and genomic and pedigree data (FH, matrix H according to Martini et al. [18]), inbreeding coefficient using Plink (FHOM), inbreeding coefficients at 3rd, 6th, and 9th generations (F3, F6 and F9, respectively), classical inbreeding coefficient (F), ancestral Ballou inbreeding coefficient (Fa_Bal), ancestral history coefficient (AHC), ancestral Kalinowski inbreeding coefficient (Fa_Kal) and new Kalinowski inbreeding coefficient (Fnew_Kal)