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Table 9 Effect of dietary Enterococcus faecium NCIMB 11181 supplementation on α-diversity of cecal microbiota of broiler chickens challenged with Salmonella Typhimurium

From: Pretreatment with probiotics Enterococcus faecium NCIMB 11181 attenuated Salmonella Typhimurium-induced gut injury through modulating intestinal microbiome and immune responses with barrier function in broiler chickens

Items

ST1

Clean reads/tags

Effective reads

OTUs

Chao1

Goods-coverage

Shannon

Simpson

Dosage, mg/kg

  0

–

141,844

130,059

5982

5894.15

0.98

6.41

0.92

  200

–

157,548

139,395

7020

7289.19

0.98

6.76

0.93

  0

 + 

139,543

125,817

6338

6173.16

0.98

6.74

0.92

  200

 + 

159,097

146,880

6425

6524.50

0.98

6.76

0.94

  SEM2

 

20,771

17,075

1864

429.555

0.001

0.121

0.006

Main factors

  0

 

140,694

127,938

6160

6033.65

0.98

6.57

0.92

  200

 

158,318

143,138

6723

6906.84

0.98

6.76

0.94

  Non-challenged

 

149,696

134,727

6501

6591.67

0.98

6.58

0.93

  Challenged

 

149,320

136,349

6382

6348.83

0.98

6.75

0.93

Main factors and Interaction (P-value)3

  Enterococcus faecium

 

0.044

0.030

0.482

0.339

0.234

0.472

0.178

  Challenged

 

0.964

0.806

0.892

0.788

0.713

0.509

0.942

  Enterococcus faecium × Challenged

 

0.816

0.379

0.550

0.565

0.898

0.514

0.775

  1. 1Challenged with Salmonella Typhimurium; –, without ST challenged; + , with ST challenged
  2. 2SEM, standard error of the mean
  3. 3P-value represent the main effect of the diet, the main effect of ST challenged, and the interaction between the dietary treatments and ST challenged