Estimates of genomic inbreeding and identification of candidate regions that differ between Chinese indigenous sheep breeds

Table 3 List of ROH islands identified in five Chinese indigenous sheep breeds

Breeds	Chr	Number of SNPs	Start, bp	End, bp	Number of genes
ALT	1	61	250,505,889	250,968,614	2
	2	29	122,022,456	122,196,859	0
	2	67	122,203,171	122,713,621	1
	2	49	122,789,438	123,131,444	0
	10	1	36,431,208	36,431,208	1
	10	12	42,602,855	42,668,804	0
	10	2	42,864,819	42,886,791	0
	10	2	43,201,824	43,218,840	0
	12	79	78,441,984	79,070,188	7
	13	104	52,983,990	53,669,096	27
	15	71	3,369,761	3,860,098	1
	20	53	49,963,739	50,507,014	1
LTH	1	68	250,505,243	251,024,337	2
	2	9	114,531,332	114,582,444	0
	2	188	122,066,517	123,448,890	1
	4	86	68,604,130	69,128,428	21
	12	91	78,412,601	79,070,188	7
	13	90	53,019,664	53,640,527	25
	17	33	53,546,799	53,758,306	2
HLB	2	3	114,602,806	114,611,225	0
	2	19	115,006,350	115,133,173	0
	2	146	122,203,171	123,318,733	1
	4	59	68,730,153	69,128,428	21
	6	1	79,981,634	79,981,634	0
	9	61	77,276,731	77,807,912	1
	10	105	35,838,530	36,431,208	10
	10	12	42,602,855	42,668,804	0
	12	79	78,441,984	79,070,188	7
	13	4	49,772,494	49,800,472	0
	13	82	53,046,392	53,647,951	25
STG	2	67	122,203,171	122,713,621	1
	4	55	68,730,153	69,082,247	20
	6	3	78,164,118	78,171,900	0
	6	22	78,190,079	78,372,681	1
	6	5	79,989,614	80,013,968	0
	6	41	80,045,125	80,283,293	0
	9	43	77,387,147	77,790,278	1
	10	47	35,839,462	36,132,909	5
	10	52	36,173,170	36,431,208	6
	10	34	42,602,855	42,829,373	0
	10	29	42,862,671	43,163,671	0
	12	78	78,449,224	79,070,188	7
	13	72	53,065,617	53,589,429	22
	20	7	50,349,355	50,424,219	1
TIB	2	154	122,210,623	123,369,957	1
	5	75	19,764,108	20,233,040	4
	10	168	42,182,526	43,525,344	0
	12	78	78,449,224	79,070,188	7
	13	55	53,152,803	53,589,429	18

Note: ALT, LTH, HLB, STG and TIB represent Altay sheep, Large-tailed Han sheep, Hulun Buir sheep, Short-tailed grassland sheep and Tibetan sheep, respectively

ISSN: 2049-1891