Skip to main content

Table 2 Predicted KEGG hierarchies (orthologs, modules, and pathways), Protein families (Pfam), Clusters of Orthologous Genes (COG), Enzyme Classification numbers (EC numbers), and MetaCyc pathways counts in each treatment

From: Dietary energy sources and levels shift the multi-kingdom microbiota and functions in the rumen of lactating dairy cows

Measurements LE HE SEM P-values
GC SFC GC SFC NE ES Period NE × ES
KEGG orthologs 5731 5563 5351 5290 67 0.0126 0.3778 0.5038 0.6221
KEGG modules 282 278 280 276 1 0.5080 0.1011 0.5542 0.9846
KEGG pathways 145A 143AB 140B 141AB 1 0.0059 0.8504 0.3523 0.2589
PFAM 6757a 6595ab 6384ab 6329b 68 0.0120 0.3980 0.3932 0.6092
COG 4181a 4111ab 4064ab 4045b 22 0.0283 0.2666 0.7715 0.5084
EC numbers 1816A 1757AB 1715AB 1697B 16 0.0096 0.2191 0.3870 0.4541
Fungal EC numbers 989A 984AB 972AB 966B 3 0.0016 0.3540 0.3209 0.9354
MetaCyc pathways 369A 361AB 343B 345AB 4 0.0035 0.6464 0.5974 0.4276
  1. LE Low energy, HE High energy, GC ground corn, SFC Steam-flaked corn, NE Effect of dietary energy level, ES effect of energy sources, NE × ES Interaction between NE and ES
  2. Different superscripts within a row indicate significant difference (P ≤ 0.05), while different superscripts in lower case indicate tendency (P ≤ 0.1). The P-values ≤0.05 are bolded