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Table 1 Simulation parameters of the population structure

From: Comparisons of improved genomic predictions generated by different imputation methods for genotyping by sequencing data in livestock populations

Steps

Population structure

Values

 

Number of replicates

10

 

Overall heritability

0.3

 

QTL heritability

0.3

 

Phenotypic variance

1.0

Step 1: Historical generations (HGs)

Foundation population size of (HGs)

2000

Number of generations in phase 1

1000

Population size in phase 1

2000

Number of generations in phase 2

200

Population size in the end of phase 2

400

The number of males in the last (HG)

200

The number of females in the last (HG)

200

Number of males from HG

40

Number of females from HG

200

Step 2: Expanded generations (EGs)

Number of generations

1

Litter size

5

The proportion of male progeny

50%

Mating design

Random

Number of males from EG

100

Number of females from EG

500

Step 3: Recent generations

Number of generations

10

Litter size

5

The Proportion of male progeny

50%

Mating design

Random

Sire replacement

80%

Dam replacement

40%

 

Selection design

EBV