Identification of recombination hotspots and quantitative trait loci for recombination rate in layer chickens

Table 3 Description of 1-Mb windows that explained more than 0.8% of genetic variance and significant SNPs within those windows for genome-wide recombination number in brown layers

GGA_Mb	# SNP	GV%^a	WPPA^b	Most significant SNP^c	SPPI^d	GV% SNP	MAF^e	Position, Mb	P-value^f	Candidate gene
1_15	22	0.83	0.49	Gga_rs13713650	0.34	0.10	0.38	15.28	0.022	CBLL1
1_66	19	5	0.57	Gga_rs13879050	0.45	0.10	0.39	66.67	0.06	RECQL
2_73	16	19.74	0.80	Gga_rs14203992	0.74	0.20	0.35	73.74	0.07	CDH10
2_138,140–141	72	12.16	0.29	Gga_rs13794969	0.17	2.24	0.39	138.20	0.005	MYC
4_85	33	2.21	0.80	Gga_rs14498387	0.67	0.54	0.29	85.48	0.07	RNF212, MAEA, FGFRL1, MRPL35
12_2	23	0.83	0.61	Gga_rs14032471	0.50	0.46	0.071	2.72	0.1	FANCD2, GNAI2

ISSN: 2049-1891