Table 2 Description of 1-Mb windows that explained more than 0.8% of genetic variance and significant SNPs within those windows for genome-wide recombination number in white layers
GGA_Mb | # SNP | GV%a | WPPAb | Most significant SNPc | SPPId | GV% SNP | MAFe | Position, Mb | P- valuef | Candidate gene |
|---|---|---|---|---|---|---|---|---|---|---|
1_54 | 126 | 1.00 | 0.27 | AX-80768024 | 0.02 | 0.05 | 0.132 | 54.56 | 0.003 | TDG, NFYB |
1_84 | 112 | 8.39 | 0.54 | AX-80984549 | 0.52 | 8.38 | 0.151 | 84.06 | 0.04 | RPL24, IMPG2 |
1_158 | 165 | 1.00 | 0.23 | AX-75313537 | 0.01 | 0.42 | 0.349 | 158.73 | 0.005 | |
1_162–165 | 801 | 4.39 | 0.89 | AX-75325622 | 0.02 | 1.3 | 0.189 | 165.07 | 0.006 | RGCC, WBP4, LECT1 |
1_171 | 198 | 1.00 | 0.34 | AX-75341236 | 0.02 | 0.1 | 0.316 | 171.68 | 0.03 | CCNA1 |
2_76–77 | 408 | 4.13 | 0.76 | AX-76154814 | 0.02 | 0.15 | 0.346 | 77.43 | 0.06 | ANKH |
2_81–82 | 196 | 3.91 | 0.64 | AX-76163810 | 0.01 | 0.38 | 0.312 | 82.25 | 0.04 | |
3_85 | 468 | 3.92 | 0.79 | AX-76572482 | 0.01 | 0.16 | 0.357 | 86.15 | 0.04 | PRIM2 |
4_44 | 183 | 7.93 | 0.56 | AX-76669056 | 0.48 | 7.88 | 0.126 | 44.57 | 0.08 | EPGN, AREGB, EREG |
5_13 | 398 | 2.23 | 0.64 | AX-76779213 | 0.01 | 0.26 | 0.355 | 13.59 | 0.02 | IGF2, MRPL23, RAG1, RAG2 |
10_1 | 382 | 1.08 | 0.39 | AX-75574022 | 0.01 | 0.1 | 0.472 | 1.06 | 0.03 | RPS17L |
13_3 | 166 | 2.37 | 0.50 | AX-75754286 | 0.01 | 0.77 | 0.465 | 3.62 | 0.02 | |
20_5 | 283 | 1.02 | 0.35 | AX-76217814 | 0.01 | 0.2 | 0.316 | 5.09 | 0.02 | YWHAB |
20_10 | 189 | 1.15 | 0.29 | AX-76199322 | 0.03 | 0.12 | 0.385 | 10.96 | 0.005 | SPO11 |