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Table 9 Associations of haplotype polymorphisms in CIITA, HSPA8, SERPING1, and ATP2A3 with FEC for goat breeds

From: Single nucleotide polymorphisms in candidate genes are significantly associated with resistance to Haemonchus contortus infection in goats

Gene Haplotype YCW NJY ESB CCB BBG
No. Mean ± SE No. (Mean ± SE) No. (Mean ± SE) No. (Mean ± SE) No. (Mean ± SE)
CIITA CCTT 31 2.22 ± 0.12 55 2.06 ± 0.09 37 2.53 ± 0.09   2.44 ± 0.07   1.57 ± 0.03
TCAT 1 3.15 ± 0.66 1 3.31 ± 0.73 7 3.19 ± 0.30
TTAA 1 3.18 ± 0.79
HSPA8 GGAA 27 2.31 ± 0.13 37 2.09 ± 0.12b 32 2.59 ± 0.10 93 2.45 ± 0.08 154 1.58 ± 0.03
AGAG 4 1.76 ± 0.33 16 1.87 ± 0.18a 4 2.13 ± 0.29 50 2.47 ± 0.11 64 1.56 ± 0.05
AAGG 1 2.51 ± 0.67 3 3.00 ± 0.41c   11 2.71 ± 0.24 5 1.54 ± 0.17
SERPING1 CCGG 14 2.40 ± 0.18 30 2.05 ± 0.13 18 2.48 ± 0.14 77 2.49 ± 0.09a 152 1.57 ± 0.03
TCGT 14 2.13 ± 0.18 20 2.16 ± 0.17 17 2.59 ± 0.14 67 2.37 ± 0.08a 71 1.55 ± 0.04
TTTT 4 2.14 ± 0.34 5 2.07 ± 0.34 2 2.48 ± 0.42 11 2.98 ± 0.24b 3 2.09 ± 0.21
ATP2A3 AGAC 15 2.13 ± 0.18b 20 2.32 ± 0.16b 15 2.56 ± 0.15 70 2.50 ± 0.09a 32 1.58 ± 0.07
GGAA 14 2.46 ± 0.18c 22 1.83 ± 0.15a 13 2.31 ± 0.16 61 2.36 ± 0.10a 178 1.59 ± 0.38
AACC 3 1.89 ± 0.15a 14 2.14 ± 0.19a 9 2.80 ± 0.19 15 2.89 ± 0.21b 3 1.39 ± 0.21
AAAC 3 2.97 ± 0.46b 11 1.39 ± 0.11
  1. Numbers of the digit in bracket indicate the number of the individuals in the group
  2. a, b, c Means within a column and breed with different superscripts differ (P < 0.05)