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Table 7 Least-squares means for FEC, PCV and BW of each SNP genotypes in all goats

From: Single nucleotide polymorphisms in candidate genes are significantly associated with resistance to Haemonchus contortus infection in goats

SNPs ID Genotype n All goats
FEC PCV, % BW, kg
CIITA_161_C > T CC 494 2.00 ± 0.08a 26.26 ± 0.21 14.45 ± 0.97
TC 9 3.05 ± 0.09b 25.83 ± 0.34 15.89 ± 6.84
TT 1 3.08 ± 0.23ab 24.00 ± 0.00 27.00 ± 0.00
CIITA_481_A > T AA 2 3.09 ± 0.14ab 24.00 ± 0.38 27.00 ± 0.77
AT 8 3.06 ± 0.07b 25.83 ± 0.25 15.89 ± 0.84
TT 495 2.00 ± 0.09a 26.27 ± 0.21 14.46 ± 0.96
HSPA8_1024_A > G AA 20 2.42 ± 0.15b 26.45 ± 0.22 16.87 ± 0.43
AG 138 1.98 ± 0.11a 26.13 ± 0.33 14.13 ± 0.83
GG 348 2.01 ± 0.08a 26.28 ± 0.16 14.50 ± 1.03
HSPA8_1064_A > G AA 344 2.01 ± 0.04a 26.30 ± 0.18 14.49 ± 0.06
AG 138 2.00 ± 0.07a 26.13 ± 0.33 15.13 ± 0.82
GG 20 2.42 ± 0.15b 26.45 ± 0.32 16.87 ± 0.43
ESYT1_559_G > C GG 381 1.97 ± 0.09a 25.32 ± 0.17 14.41 ± 0.94
GC 107 2.18 ± 0.12b 26.23 ± 0.37 15.40 ± 1.02
CC 17 2.15 ± 0.15b 25.32 ± 0.17 16.41 ± 0.75
STAT5B_197_A > G AA 144 2.00 ± 0.06b 26.39 ± 0.15 14.96 ± 0.25
AG 224 1.92 ± 0.07a 26.30 ± 0.17 14.36 ± 0.59
GG 127 2.24 ± 0.08c 26.09 ± 0.28 14.53 ± 0.22
SERPING1_312_C > T CC 292 2.01 ± 0.04a 26.37 ± 0.26 14.38 ± 0.14
TC 189 2.00 ± 0.06a 26.15 ± 0.16 14.72 ± 0.70
TT 25 2.31 ± 0.14b 25.66 ± 0.43 14.69 ± 0.96
SERPING1_615_G > T GG 291 2.01 ± 0.04a 26.37 ± 0.26 14.36 ± 0.12
GT 189 2.00 ± 0.06a 26.15 ± 0.16 14.72 ± 0.70
TT 25 2.30 ± 0.14b 25.66 ± 0.43 14.70 ± 0.96
ATP2A3_150_A > G AA 59 2.20 ± 0.08c 25.47 ± 0.19 16.20 ± 0.03b
AG 155 2.14 ± 0.11b 26.52 ± 0.25 15.06 ± 0.94b
GG 290 1.92 ± 0.10a 26.30 ± 0.15 13.88 ± 0.91a
ATP2A3_680_A > C AA 289 1.93 ± 0.04a 26.27 ± 0.16 13.90 ± 0.93a
AC 167 2.12 ± 0.06b 26.44 ± 0.14 14.75 ± 0.99a
CC 45 2.25 ± 0.11c 25.61 ± 0.54 17.32 ± 0.65b
  1. FEC fecal egg count, PCV packed cell volume, BW body weight. FEC were transformed as LFEC = log10(FEC + 25) before analysis
  2. a, b, cMeans within a column and SNP with different superscripts differ (P < 0.05)