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Table 2 Candidate regions associated with fatty acid composition and fatty acid groups

From: Genome wide association study identifies SNPs associated with fatty acid composition in Chinese Wagyu cattle

Trait

SNP name

BTA

Position

SNPa

MAF

P-value

SNP effectb

SE

PCGc

Saturated FA

 C22:0

BovineHD0600017622

6

63657334

G/A

0.342

5.80E-07

0.002212982

0.000454901

–

Monounsaturated FA

 C14:1 cis-9

BovineHD2600005461

26

21140458

G/A

0.3791

1.72E-07

−0.116976244

0.0247878

SCD

 C14:1 cis-9

BovineHD2600005464

26

21144884

G/A

0.3764

2.62E-07

−0.114923399

0.0247513

SCD

 C14:1 cis-9

BovineHD2600005466

26

21146794

G/A

0.3984

1.02E-07

−0.118178451

0.0242669

SCD

 C14:1 cis-9

BovineHD2600005465

26

21146019

G/A

0.397

1.22E-07

−0.117257801

0.0241962

SCD

 C18:1 cis-9

BovineHD0600017761

6

64216527

A/G

0.0989

2.90E-07

−2.77403258

0.55471

–

 C18:1 cis-9

BovineHD0600017773

6

64280345

C/A

0.1511

4.12E-07

−2.356278809

0.477168

–

 C20:1 cis-11

BovineHD0800012682

8

42650702

G/A

0.05769

4.89E-07

0.105893342

0.00215886

SMARCA2

Polyunsaturated FA

 C22:6 n-3

BovineHD0100034705

1

122808627

G/A

0.364

3.38E-10

0.004481756

0.00137556

PLSCR5

 C22:6 n-3

BovineHD0200040673

2

73693578

G/A

0.0728

9.19E-08

0.007072896

0.00233111

CLASP1

 C22:6 n-3

BovineHD0300010307

3

33051872

A/G

0.06319

1.31E-07

0.007624579

0.0025411

CYM

 C22:6 n-3

BovineHD1000015166

10

50404371

A/C

0.1456

4.86E-08

0.005148315

0.00176711

–

 C22:6 n-3

BovineHD1000029857

10

102483257

A/C

0.1181

3.48E-07

0.005129722

0.00198152

–

 C22:6 n-3

BovineHD1400018498

14

66120964

A/G

0.1168

8.09E-08

0.005746942

0.0019963

–

 C22:6 n-3

BovineHD2800003012

28

9852321

A/G

0.06044

3.59E-07

−0.006883573

0.00246427

–

Fatty acid groups

 SFA

BovineHD0600017761

6

64216527

A/G

0.0989

4.29E-07

2.276282318

0.454104

–

 PUFA

BovineHD0500031844

5

110438965

A/G

0.06456

3.26E-07

0.629658268

0.126903

BAIAP2L2, MAFF, TMEM184B

 MUFA

BovineHD0600017761

6

64216527

A/G

0.0989

8.95E-08

−2.641123459

0.505798

–

 MUFA

BovineHD0600017773

6

64280345

C/A

0.1511

4.43E-07

−2.15015271

0.436519

–

 n-6

BovineHD0500031844

5

110438965

A/G

0.06456

1.21E-07

0.5470253

0.148374

BAIAP2L2, MAFF, TMEM184B

 PUFA/SFA

BovineHD0500031844

5

110438965

A/G

0.06456

5.56E-07

0.01371442

0.00280407

BAIAP2L2, MAFF, TMEM184B

 PUFA/SFA

BovineHD0900022545

9

81183556

G/A

0.07005

5.48E-07

0.012964716

0.00264927

MIR2284AA-4

 PUFA/SFA

BovineHD1500021109

15

73179761

A/C

0.4931

7.80E-08

−0.007313559

0.0013969

–

  1. aminor allele/ major allele
  2. bThe SNP effect was the additive effect calculated by FarmCPU
  3. cPositional/putative candidate gene