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Table 2 Candidate regions associated with fatty acid composition and fatty acid groups

From: Genome wide association study identifies SNPs associated with fatty acid composition in Chinese Wagyu cattle

Trait SNP name BTA Position SNPa MAF P-value SNP effectb SE PCGc
Saturated FA
 C22:0 BovineHD0600017622 6 63657334 G/A 0.342 5.80E-07 0.002212982 0.000454901 –
Monounsaturated FA
 C14:1 cis-9 BovineHD2600005461 26 21140458 G/A 0.3791 1.72E-07 −0.116976244 0.0247878 SCD
 C14:1 cis-9 BovineHD2600005464 26 21144884 G/A 0.3764 2.62E-07 −0.114923399 0.0247513 SCD
 C14:1 cis-9 BovineHD2600005466 26 21146794 G/A 0.3984 1.02E-07 −0.118178451 0.0242669 SCD
 C14:1 cis-9 BovineHD2600005465 26 21146019 G/A 0.397 1.22E-07 −0.117257801 0.0241962 SCD
 C18:1 cis-9 BovineHD0600017761 6 64216527 A/G 0.0989 2.90E-07 −2.77403258 0.55471 –
 C18:1 cis-9 BovineHD0600017773 6 64280345 C/A 0.1511 4.12E-07 −2.356278809 0.477168 –
 C20:1 cis-11 BovineHD0800012682 8 42650702 G/A 0.05769 4.89E-07 0.105893342 0.00215886 SMARCA2
Polyunsaturated FA
 C22:6 n-3 BovineHD0100034705 1 122808627 G/A 0.364 3.38E-10 0.004481756 0.00137556 PLSCR5
 C22:6 n-3 BovineHD0200040673 2 73693578 G/A 0.0728 9.19E-08 0.007072896 0.00233111 CLASP1
 C22:6 n-3 BovineHD0300010307 3 33051872 A/G 0.06319 1.31E-07 0.007624579 0.0025411 CYM
 C22:6 n-3 BovineHD1000015166 10 50404371 A/C 0.1456 4.86E-08 0.005148315 0.00176711 –
 C22:6 n-3 BovineHD1000029857 10 102483257 A/C 0.1181 3.48E-07 0.005129722 0.00198152 –
 C22:6 n-3 BovineHD1400018498 14 66120964 A/G 0.1168 8.09E-08 0.005746942 0.0019963 –
 C22:6 n-3 BovineHD2800003012 28 9852321 A/G 0.06044 3.59E-07 −0.006883573 0.00246427 –
Fatty acid groups
 SFA BovineHD0600017761 6 64216527 A/G 0.0989 4.29E-07 2.276282318 0.454104 –
 PUFA BovineHD0500031844 5 110438965 A/G 0.06456 3.26E-07 0.629658268 0.126903 BAIAP2L2, MAFF, TMEM184B
 MUFA BovineHD0600017761 6 64216527 A/G 0.0989 8.95E-08 −2.641123459 0.505798 –
 MUFA BovineHD0600017773 6 64280345 C/A 0.1511 4.43E-07 −2.15015271 0.436519 –
 n-6 BovineHD0500031844 5 110438965 A/G 0.06456 1.21E-07 0.5470253 0.148374 BAIAP2L2, MAFF, TMEM184B
 PUFA/SFA BovineHD0500031844 5 110438965 A/G 0.06456 5.56E-07 0.01371442 0.00280407 BAIAP2L2, MAFF, TMEM184B
 PUFA/SFA BovineHD0900022545 9 81183556 G/A 0.07005 5.48E-07 0.012964716 0.00264927 MIR2284AA-4
 PUFA/SFA BovineHD1500021109 15 73179761 A/C 0.4931 7.80E-08 −0.007313559 0.0013969 –
  1. aminor allele/ major allele
  2. bThe SNP effect was the additive effect calculated by FarmCPU
  3. cPositional/putative candidate gene
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Journal of Animal Science and Biotechnology

ISSN: 2049-1891