Table 2 Mitochondrial mutations (excluding synonymous mutations) and corresponding effects on the number of piglets born alive
From: Polymorphism of mitochondrial tRNA genes associated with the number of pigs born alive
Gene | Nucleotide mutationa | Codon mutation | Amid acid substitution | Sig.b | Grantham score |
|---|---|---|---|---|---|
Dloop | T109C | – | – | ns | – |
T124A | – | – | ns | – | |
G131A | – | – | ns | – | |
mt136: ACCA-ACA | – | – | ns | – | |
C145T | – | – | ns | – | |
C153T | – | – | ns | – | |
A158G | – | – | ns | – | |
T181C | – | – | ns | – | |
T241C | – | – | ns | – | |
C279T | – | – | ns | – | |
A294G | – | – | ns | – | |
C306T | – | – | ns | – | |
C323T | – | – | ns | – | |
C390T | – | – | ns | – | |
T405C | – | – | ns | – | |
A443G | – | – | ns | – | |
C452T | – | – | ns | – | |
C474T | – | – | ns | – | |
A501G | – | – | ns | – | |
A575G | – | – | ns | – | |
T992C | – | – | ns | – | |
mt1013: TC-TcttataaaacaC | – | – | ns | – | |
T1089C | – | – | ns | – | |
A1096G | – | – | ns | – | |
T1146C | – | – | ns | – | |
tRNA-Phe | A1225G | – | – | * | – |
G1234A | – | – | ns | – | |
T1236C | – | – | * | – | |
12S rRNA | T1333C | – | – | ns | – |
mt1550: GA-GaA | – | – | ns | – | |
T1559C | – | – | ns | – | |
C1644G | – | – | ns | – | |
G1826A | – | – | ns | – | |
G1910A | – | – | ns | – | |
T1984C | – | – | ns | – | |
C1991T | – | – | ns | – | |
tRNA-Val | C2255T | – | – | * | – |
G2259A | – | – | * | – | |
16S rRNA | C2294T | – | – | ns | – |
C2534T | – | – | ns | – | |
T2679C | – | – | ns | – | |
C2985T | – | – | ns | – | |
A3009G | – | – | ns | – | |
C3023T | – | – | ns | – | |
A3287G | – | – | ns | – | |
T3355C | – | – | ns | – | |
C3372T | – | – | ns | – | |
G3561A | – | – | ns | – | |
T3794A | – | – | ns | – | |
ND1 | C4658T | UCC-UuC | S-F | ns | 155 |
C4675T | CCA-uCA | P-S | ns | 74 | |
ND2 | A5384C | AUG-cUG | M-L | ns | 15 |
T5718C | AUA-AcA | M-T | ns | 81 | |
G5801A | GUC-aUC | V-I | ns | 29 | |
A6074G | AUU-gUU | I-V | ns | 29 | |
G6092A | GUC-aUC | V-I | ns | 29 | |
tRNA-Ala | C6217T | – | – | * | – |
T6219C | – | – | * | – | |
G6265A | – | – | ns | – | |
tRNA-Cys | T6429C | – | – | * | – |
tRNA-Asp | G8188A | – | – | ns | – |
ATP8 | T9077C | AuU-AcC | I-T | ns | 89 |
T9078C | AUu-ACc | I-T | ns | 89 | |
T9146C | UUA-UcA | L-S | ns | 145 | |
C9155T | CCA-CuA | P-L | ns | 98 | |
ATP6 | T9289C | AUA-AcA | M-T | ns | 81 |
C9333T | CUU-uUU | L-F | ns | 22 | |
T9474C | UAU-cAU | Y-H | ns | 83 | |
T9526C | CUA-CcA | L-P | ns | 98 | |
A9673G | AAC-AgC | N-S | ns | 46 | |
COX3 | C9894T | ACU-AuU | T-I | ns | 89 |
tRNA-Gly | T10601C | – | – | * | – |
ND3 | C10674T | CUC-uUC | L-F | ns | 22 |
G10737A | GCA-aCA | A-T | ns | 58 | |
T10939C | AUC-AcC | I-T | ns | 89 | |
G10992A | GCA-aCA | A-T | ns | 58 | |
ND4L | G11105A | GCG-aCG | A-T | ns | 58 |
A11210G | AUC-gUC | I-V | ns | 29 | |
ND4 | A12439G | AUA-gUA | M-V | ns | 21 |
C12596T | ACU-AuU | T-I | ns | 89 | |
tRNA-Leu | A12879G | – | – | * | – |
C12883T | – | – | * | – | |
ND5 | C12999A | UCC-UaC | S-Y | ns | 144 |
A13034G | AAC-gAC | N-D | ns | 23 | |
C13526T | CUU-uUU | L-F | ns | 22 | |
T14130C | GUA-GcA | V-A | ns | 64 | |
C14218A | UUC-UUa | F-L | ns | 22 | |
A14234C | AAA-cAA | K-Q | ns | 53 | |
T14601C | AUU-AcU | I-T | ns | 89 | |
C14628T | ACA-AuA | T-M | ns | 81 | |
C14733T | ACA-AuA | T-M | ns | 81 | |
tRNA-Glu | T15283C | – | – | * | – |
Cytb | G16224A | GUA-aUA | V-M | ns | 21 |
A16281G | AGC-gGC | S-G | ns | 56 | |
A16443G | AUC-gUC | I-V | ns | 29 | |
tRNA-Thr | C16487T | – | – | * | – |
G16531A | – | – | * | – |