A genome-wide landscape of mRNAs, lncRNAs, and circRNAs during subcutaneous adipogenesis in pigs

Table 1 Basic data of sequencing in four stages of adipocyte differentiation

Terms	D0	D2	D4	D8
Raw reads number	189,475,072	165,990,894	201,125,216	139,876,842
Clean reads number	155,981,654	137,762,268	168,562,368	119,115,476
Clean reads rate, %	82.32	82.99	83.81	85.16
Clean Q30 bases rate, %	94.99	94.80	94.81	95.35
Mapped reads	152,068,735	134,451,565	164,621,381	116,588,244
Mapped reads	(155,834,560)	(137,634,429)	(168,443,435)	(119,037,090)
Mapping rate, %	97.49	97.60	97.66	97.88
Mapping rate, %	(99.91)	(99.91)	(99.93)	(99.93)

The values outside the brackets represent the reads and proportion that were compared to those in the pig reference genome (Sus scrofa 11.1) using the HiSAT2 program, while the values inside the brackets represent the reads and proportion that were compared to those in the pig reference genome (Sus scrofa 11.1) using the BWA-MEM algorithm

ISSN: 2049-1891