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Table 1 Basic data of sequencing in four stages of adipocyte differentiation

From: A genome-wide landscape of mRNAs, lncRNAs, and circRNAs during subcutaneous adipogenesis in pigs

Terms D0 D2 D4 D8
Raw reads number 189,475,072 165,990,894 201,125,216 139,876,842
Clean reads number 155,981,654 137,762,268 168,562,368 119,115,476
Clean reads rate, % 82.32 82.99 83.81 85.16
Clean Q30 bases rate, % 94.99 94.80 94.81 95.35
Mapped reads 152,068,735 134,451,565 164,621,381 116,588,244
(155,834,560) (137,634,429) (168,443,435) (119,037,090)
Mapping rate, % 97.49 97.60 97.66 97.88
(99.91) (99.91) (99.93) (99.93)
  1. The values outside the brackets represent the reads and proportion that were compared to those in the pig reference genome (Sus scrofa 11.1) using the HiSAT2 program, while the values inside the brackets represent the reads and proportion that were compared to those in the pig reference genome (Sus scrofa 11.1) using the BWA-MEM algorithm