Table 3 Genotypes and allele frequency of seven SNPs in the designed crossbreeding population
From: Molecular cloning and characterization of the endothelin 3 gene in black bone sheep
SNP ID | Breed | Number of samples to each genotype (Genotype frequency, %) | Allele frequency | Fisher’s exact test (P value) | |||
|---|---|---|---|---|---|---|---|
| Â | Â | TT | TC | CC | T | C | Â |
g. 61276174C > T | Non-black | 23(42.59) | 28(51.85) | 3(5.56) | 0.69 | 0.31 | 0.22 |
| Â | Black | 14(63.63) | 7(31.82) | 1(4.55) | 0.80 | 0.20 | Â |
| Â | Â | AA | AG | GG | A | G | Â |
g. 61276048G > A | Non-black | 24(44.44) | 25(46.30) | 5(9.26) | 0.68 | 0.32 | 0.45 |
| Â | Black | 11(50) | 11(50) | 0 | 0.75 | 0.25 | Â |
| Â | Â | AA | AT | TT | A | T | Â |
g. 61,275,998 T > A | Non-black | 23(42.59) | 28(51.85) | 3(5.56) | 0.69 | 0.31 | 0.16 |
| Â | Black | 14(63.63) | 6(31.82) | 1(4.55) | 0.81 | 0.19 | Â |
| Â | Â | TT | TC | CC | T | C | Â |
g. 61275916C > T | Non-black | 23(42.59) | 28(51.85) | 3(5.56) | 0.69 | 0.31 | 0.16 |
| Â | Black | 14(63.63) | 6(31.82) | 1(4.55) | 0.81 | 0.19 | Â |
| Â | Â | AA | AG | GG | A | G | Â |
g. 61272867G > A | Non-black | 21(38.89) | 30(55.55) | 3(5.56) | 0.67 | 0.33 | 0.28 |
| Â | Black | 13(59.09) | 8(36.36) | 1(4.55) | 0.77 | 0.23 | Â |
| Â | Â | AA | AG | GG | A | G | Â |
g. 56451746G > A | Non-black | 23(42.59) | 28(51.85) | 3(5.56) | 0.69 | 0.31 | 0.22 |
| Â | Black | 14(63.63) | 7(31.82) | 1(4.55) | 0.80 | 0.20 | Â |
| Â | Â | TT | TC | CC | T | C | Â |
g. 56465925C > T | Non-black | 47(94.44) | 3(5.56) | 0 | 0.97 | 0.03 | 0.63 |
| Â | Black | 19(90.90) | 2(9.10) | 0 | 0.95 | 0.05 | Â |