Table 3 Summary of imputation from 600Â K to WGS data
From: Imputation from SNP chip to sequence: a case study in a Chinese indigenous chicken population
Chr. | SNP # in sequence | SNP # in chip | SNP # for validation | Total time-consuming, s | |
|---|---|---|---|---|---|
Beagle | FImpute | ||||
1 | 3,177,578 | 81,074 | 1,621 | 403,680 | 3,066 |
3 | 1,694,589 | 45,917 | 918 | 232,456 | 1,773 |
6 | 622,557 | 17,762 | 355 | 90,281 | 727 |
28 | 74,114 | 3,866 | 77 | 1,788 | 111 |