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Table 3 Summary of imputation from 600 K to WGS data

From: Imputation from SNP chip to sequence: a case study in a Chinese indigenous chicken population

Chr. SNP # in sequence SNP # in chip SNP # for validation Total time-consuming, s
Beagle FImpute
1 3,177,578 81,074 1,621 403,680 3,066
3 1,694,589 45,917 918 232,456 1,773
6 622,557 17,762 355 90,281 727
28 74,114 3,866 77 1,788 111