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Table 2 Summary of the key individuals for re-sequencing

From: Imputation from SNP chip to sequence: a case study in a Chinese indigenous chicken population

Animal ID Clean Reads Mapped reads rate Depth of coverage Uniquely mapped reads rate SC GC NRS NRD
1 90,735,760 0.951 15.81 0.942 0.988 0.979 0.972 0.042
2 117,996,876 0.964 12.87 0.959 0.998 0.928 0.947 0.128
3 105,660,610 0.938 16.21 0.928 0.975 0.979 0.961 0.040
4 125,426,182 0.953 17.11 0.947 0.974 0.976 0.954 0.047
5 111,564,528 0.956 13.60 0.951 0.997 0.985 0.989 0.029
6 127,019,556 0.960 14.68 0.955 0.998 0.957 0.968 0.079
7 99,058,934 0.873 15.11 0.864 0.990 0.976 0.974 0.046
8 130,604,192 0.961 15.19 0.956 0.953 0.991 0.951 0.018
9 141,700,352 0.961 16.25 0.956 0.999 0.991 0.995 0.017
10 141,847,268 0.965 14.39 0.960 0.999 0.991 0.995 0.018
11 115,053,394 0.958 13.92 0.953 0.997 0.986 0.989 0.026
12 141,220,480 0.965 14.41 0.961 0.999 0.992 0.995 0.016
13 126,408,732 0.959 14.44 0.951 0.997 0.953 0.964 0.087
14 137,853,286 0.963 14.79 0.958 0.998 0.989 0.993 0.022
15 124,123,884 0.961 13.92 0.955 0.998 0.987 0.991 0.026
16 134,906,464 0.970 13.88 0.965 0.999 0.990 0.995 0.020
17 137,609,612 0.957 13.77 0.950 0.998 0.988 0.992 0.024
18 140,592,166 0.954 14.53 0.946 0.998 0.990 0.993 0.020
19 120,575,426 0.955 14.53 0.949 0.996 0.986 0.988 0.028
20 131,305,824 0.962 14.29 0.957 0.998 0.980 0.988 0.038
21 140,828,990 0.964 15.43 0.959 0.997 0.989 0.992 0.020
22 134,838,280 0.965 14.33 0.960 0.998 0.966 0.977 0.064
23 115,132,512 0.951 13.51 0.944 0.997 0.988 0.989 0.024
24 112,104,986 0.953 13.84 0.947 0.998 0.989 0.990 0.022
  1. SC SNP concordance, GC Genotype concordance, NRS Non-reference sensitivity, NRD Non-reference discrepancy