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Fig. 2 | Journal of Animal Science and Biotechnology

Fig. 2

From: Imputation from SNP chip to sequence: a case study in a Chinese indigenous chicken population

Fig. 2

Average imputation accuracy of the direct imputation and two-step imputation obtained with FImpute and Beagle against four chromosomes (chr1, chr3, chr6 and chr28) among 5 replications. 60K_WGS was the direct imputation from 60 K to WGS data. 60K_600K_WGS was the two-step imputation from 60 K to 600 K data and then to WGS data. 600K_WGS was the direct imputation from 600 K to WGS data. The imputation accuracies were the genotype concordance between the true and imputed genotypes

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