Table 3 Differentially expressed genes in hypothalamus of WRR and XH chickens
From: Identification and characterization of genes that control fat deposition in chickens
Gene symbol | Gene title | P value | Fold-change | Chromosomes alignment |
|---|---|---|---|---|
Lipid metabolic process | ||||
P20K | quiescence-specific protein | 0,0109 | -2,402 | chr17:881078-883996 |
Porphyrin biosynthetic process | ||||
FECH | ferrochelatase (protoporphyria) | 0,009 | -2,155 | chrZ:267090-278253 |
Nitrogen compound metabolic process | ||||
RCJMB04_35g11 | vanin 1 | 0,0406 | -2,312 | chr3:58745711-58758866 |
Transport | ||||
PMP2 | peripheral myelin protein 2 | 0,031 | 3,405 | chr2:126148069-126152515 |
Ion transport | ||||
SLC22A2 | solute carrier family 22 (organic cation transporter), member 2 | 0,004 | -2,123 | chr3:47342914-47355320 |
GLRA1 | glycine receptor, alpha 1 (startle disease/hyperekplexia) | 0,035 | -2,146 | chr13:12903161-12940509 |
sodium ion transport | ||||
SLC13A5 | solute carrier family 13 (sodium-dependent citrate transporter), member 5 | 0,003 | -2,046 | chr19:9754843-9769124 |
Copper ion transport | ||||
SLC31A1 | solute carrier family 31 (copper transporters), member 1 | 0,017 | 7,335 | chr17:1874758-1884555 |
Striated muscle contraction | ||||
MYBPC2 | myosin binding protein C, fast type | 0,034 | -3,717 | un |
Response to stress | ||||
HSP70 | heat shock protein 70 | 0,001 | -2,093 | chr5:55409752-55412248 |
HSP25 | heat shock protein 25 | 0,006 | -2,759 | chr27:4486260-4487251 |
Signal transduction | ||||
LOC419724 | similar to KIAA0712 protein | 0,009 | -2,393 | chr24:1172171-1264246 |
cyclic nucleotide catabolic process | ||||
N4BP2L1 | NEDD4 binding protein 2-like 1 | 0,006 | 3,732 | chr1:178835487-178837064 |
Negative regulation of endothelial cell proliferation | ||||
TNFSF15 | tumor necrosis factor (ligand) superfamily, member 15 | 0,027 | 2,553 | chr17:2943951-2959613 |
Regulation of transcription, DNA-dependent | ||||
CREB3L2 | cAMP responsive element binding protein 3-like 2 | 0,001 | -2,197 | chr1:59488049-59500378 |
MLL3 | myeloid/lymphoid or mixed-lineage leukemia 3 | 0,008 | -4,110 | chr2:6484781-6486027 |
Protein complex assembly | ||||
ATPAF1 | ATP synthase mitochondrial F1 complex assembly factor 1 | 0,003 | -3,241 | chr8:22570693-22574048 |
Protein amino acid phosphorylation | ||||
PRKD3 | protein kinase D3 | 0,0005 | -2,745 | chr3:34793675-34819927 |
SGK1 | serum/glucocorticoid regulated kinase 1 | 0,004 | 2,419 | chr3:58130872-58134430 |
RIPK2 | receptor-interacting serine-threonine kinase 2 | 0,013 | 2,532 | chr2:129010265-129029220 |
Proteolysis | ||||
FOLH1 | folate hydrolase (prostate-specific membrane antigen) 1 | 0,005 | -2,344 | chr1:191872775-191933212 |
C1R | complement component 1, r subcomponent | 0,011 | -2,014 | chr1:80553474-80558910 |
ITGBL1 | integrin, beta-like 1 (with EGF-like repeat domains) | 0,024 | 2,43 | chr1:147579457-147711379 |
VPS13B | vacuolar protein sorting 13 homolog B (yeast) | 0,041 | -2,155 | chr2:133389475-133390863 |