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Fig. 3 | Journal of Animal Science and Biotechnology

Fig. 3

From: Construction of a transposase accessible chromatin landscape reveals chromatin state of repeat elements and potential causal variant for complex traits in pigs

Fig. 3

Functional annotation of system-specific peaks. a Intervene plot showing the number of system-specific peaks and tissue-specific peaks. b Heatmap of tissue-specific peaks in 20 tissues. Each row of the heatmap shows normalized density of read-depth at one peak. c Representative examples of liver specific peaks which located close to ARG1(A protein coding gene expressed primarily in the liver and involved in the urea cycle). d Enrichment of tissue specific transcription factor motifs in each tissue (left). The columns represent 20 tissues. The rows represent motifs. The P-values were generated by HOMER. Representative examples of tissue specific transcription factor motifs were displayed (right). e Representative examples of tissue conserved peak. f Top 5 transcription factors with binding motifs enriched in tissue conserved peaks

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