Whole-genome methylation analysis reveals epigenetic variation between wild-type and nontransgenic cloned, ASMT transgenic cloned dairy goats generated by the somatic cell nuclear transfer

Table 4 Genome-wide DNA methylation quality control data

Sample	PF Reads	Clean Reads	Ratio of Reads, %	PF Bases	Clean Bases	Ratio of Bases, %	Q30, %
K2020	920,251,338	917,384,276	99.69	138,037,700,700	136,576,198,940	98.94	89.63
S2	602,531,784	6,002,777,190	99.63	90,379,767,600	89,270,005,346	98.77	89.81
K03	643,364,184	640,837,624	99.61	96,504,627,600	95,292,503,626	98.74	87.82

(1) Sample: Name of sequencing sample
(2) PF Reads: The number of original Reads
(3) Clean Reads: The number of Reads after QC
(4) Ratio of Reads: The percentage of Clean Reads in PF Reads
(5) PF Bases: The number of Bases of the original data
(6) Clean Bases: The number of Bases after QC
(7) Ratio of Bases: The percentage of Clean Bases in PF Bases
(8) Q30: Calculate the percentage of bases with Phred value greater than 30 in the total base

ISSN: 2049-1891