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Table 5 Annotation of the 29 SNPs that were significantly different in EBV of 3159 individuals

From: A significant quantitative trait locus on chromosome Z and its impact on egg production traits in seven maternal lines of meat-type chicken

GGAa

rs

Positionb

Alleles

P-value

Candidate gene

Distance, kbc

Z

rs16130627

10,815,822

A/G

1.65E-05

SPEF2

Intron

Z

rs313306756

10,839,079

G/A

1.65E-05

SPEF2

Exon1

Z

rs313329474

10,861,996

A/G

1.90E-05

ENSGALG00000051958

Intron

Z

rs317380922

10,885,055

C/G

1.90E-05

IL7R

U 1.9

Z

rs317597897

10,980,433

G/A

1.90E-05

SKP2

Exon2

Z

rs315459520

10,985,955

G/A

1.90E-05

SKP2

Intron

Z

rs315880474

11,018,303

G/A

3.60E-05

NADK2

Intron

Z

rs317829338

11,039,011

C/A

3.92E-07

RANBP3L

Intron

Z

rs317316870

11,049,964

C/G

3.92E-07

RANBP3L

Exon1

Z

rs16130829

11,138,239

G/A

7.72E-07

SLC1A3

D 32.3

Z

rs313925951

11,181,202

A/G

7.72E-07

SLC1A3

Intron

Z

rs315242894

11,250,945

G/A

7.72E-07

SLC1A3

D 16.03

Z

rs315141712

11,295,727

G/A

7.72E-07

SLC1A3

D 60.82

Z

rs313907922

11,336,593

A/G

3.87E-06

ENSGALG00000003605

U 21.55

Z

rs314230546

11,360,621

T/A

8.51E-07

ENSGALG00000003605

Intron

Z

rs316797236

11,583,068

T/A

1.39E-06

WDR70

Intron

Z

rs318193135

11,775,041

A/G

3.46E-07

GDNF

D 32.13

Z

rs14786300

11,823,333

A/G

3.46E-07

GDNF

D 80.42

Z

rs14786270

11,831,103

G/A

3.46E-07

GDNF

D 88.19

Z

rs14786427

11,995,193

A/G

6.28E-07

EGFLAM

D 2.04

Z

rs317925374

12,003,955

T/A

1.23E-06

LIFR

D 3.48

Z

rs14786514

12,081,685

G/A

1.98E-05

LIFR

U 24.65

Z

rs314845722

12,119,113

A/C

1.98E-05

ENSGALG00000048563

U 32.25

Z

rs315599389

12,161,567

T/A

1.23E-05

ENSGALG00000048563

Intron

Z

rs16131724

12,481,249

A/G

2.36E-07

DAB2

D 110.09

Z

rs313214729

12,485,174

A/G

6.92E-06

DAB2

D 114.02

Z

rs317751736

12,614,891

A/G

2.36E-07

ENSGALG00000048297

D 5.73

Z

rs317744265

12,965,710

A/G

7.63E-07

C6

D 0.38

Z

rs313761856

13,053,866

A/C

2.20E-05

PLCXD3

Intron

  1. aGallus gallus chromosome
  2. bGallus_gallus-6.0 source
  3. cU and D indicate that the SNP is upstream and downstream of a gene, respectively