Table 5 Mean relative abundance of OTUs showing a significant difference in representative fecal samples from three dietary treatments at Phase II and Phase III, %

Ssd-00001^#

0.33^a

10.57^b

2.03^a

11.02^b

1.92^a

6.06^b

L. amylovorus (99%)

Ssd-00002^#

0.03^a

2.86^b

0.12^a

1.40^b

0.08^a

2.61^b

L. johnsonii (99%)

Ssd-00014^#

0.07^a

2.24^b

0.20^a

2.26^b

0.70^a

1.45^b

T. glycolicus (97%)

Ssd-00019^#

2.11

5.43

5.25

5.73

1.48

3.97

L. reuteri (99%)

Ssd-00021^#

1.04^ab

0.10^a

0.75^b

0.52^a

1.33^ab

0.05^a

P. copri (95%)

Ssd-00039^#

0.27^a

4.46^b

1.72 ^a

8.95^bc

1.12 ^a

17.19^c

St. alactolyticus (99%)

Ssd-00123^#

7.23^abc

0.11^a

7.45^b

2.83^ac

9.32^bc

0.23^ac

L. vitulina (87%)

Ssd-00134^#

1.61^ab

3.06^b

1.10^a

2.57^b

1.60^ab

1.13^b

Cl. saccharoper. (97%)

Ssd-00188^#

0.13^a

0.57^ab

0.77^ab

1.27^ab

0.04^a

2.25^b

E. rectale (99%)

Ssd-00304^#

0.22^a

0.88^ab

0.49^ab

1.42^ab

0.49^ab

0.95^b

A. senegalensis (84%)

Ssd-00308^#

1.49^ab

0.55^a

4.35^b

1.41^ab

4.12^b

0.98^a

H. biformis (97%)

Ssd-00416^#

2.67^abc

0.06^a

1.28^b

0.08^ac

0.82^bc

0.08^a

Ph. succinatutens (95%)

Ssd-00706^#

0.48^ab

1.31^a

0.29^b

1.05^ab

0.56^ab

1.05^a

L. paracasei (81%)

Ssd-00840^#

1.20^ab

0.12^a

1.69^b

0.47^a

1.83^b

0.23^a

Co. aerofaciens (98%)

Ssd-00892^#

0.71^ab

0.42^a

2.30^b

0.44^a

1.66^ab

0.35^a

So. moorei (89%)

Ssd-00928^#

1.14^a

0.12^bc

0.60^ab

0.07^c

0.36^bc

0.08^c

R. gnavus (96%)

Ssd-00993^#

1.33^ab

0.33^ab

1.61^a

0.25^b

1.67^ab

0.20^b

F. cylindroides (88%)

Ssd-01079^#

0.62^ab

0.78^a

1.72^a

0.04^b

1.25^a

0.27^a

M. australiensis (84%)

Ssd-01080^#

0.31

0.19

0.53

0.13

1.59

0.21

I. massiliensis (92%)

Ssd-01081^#

1.34

0.60

0.11

0.36

0.46

0.75

B. pachnodae (81%)

Ssd-01244^#

2.05^a

<0.01^b

0.26^a

0.00^b

0.77^a

0.00^b

R. bromii (92%)

Ssd-01246^#

0.64^a

<0.00^b

0.49^a

<0.01^b

1.22^a

<0.01^b

Sh. azabuensis (97%)