From: A Capra hircus chromosome 19 locus linked to milk production influences mammary conformation
Trait | SNP, Chr:Pos | dbSNP number | -log10(P-value)1 | Annotation | Nearest gene | Distance to nearest gene, kb | MAF2 |
---|---|---|---|---|---|---|---|
UD | 19:25,413,768 | rs268243473 | 8.37 | Intergenic | WSCD1 | 53.48 | 0.352 |
UD | 19:25,782,297 | rs268243466 | 7.48 | Intergenic | NLRP1 | 57.74 | 0.265 |
UD, RUA | 19:25,823,025 | rs268243465 | 10.53–12.07 | Intergenic | NLRP1 | 40.73 | 0.370 |
UD | 19:26,029,220 | rs268243461 | 9.26 | Intron | RABEP1 | Within gene | 0.249 |
UD, FUA, RUA | 19:26,072,328 | rs268243460 | 7.53–14.88 | Intergenic | RABEP1 | 17.63 | 0.447 |
UD, RUA | 19:26,115,456 | rs268243459 | 8.30–12.83 | Intergenic | ZNF232 | 23.45 | 0.278 |
UD, RUA | 19:26,148,755 | rs268291686 | 10.03–13.23 | Downstream | ZFP3 | 1.30 | 0.409 |
UD, FUA, RUA | 19:26,192,128 | rs268243458 | 10.63–21.50 | Downstream | KIF1C | 3.80 | 0.417 |
UD, FUA, RUA | 19:26,420,506 | rs268256399 | 8.31–20.09 | Intron | ZMYND15 | Within gene | 0.423 |
UD, RUA | 19:26,542,254 | rs268256402 | 9.29–12.41 | Downstream | ALOX12 | 50.98 | 0.285 |
UD, FUA, RUA | 19:26,578,775 | rs268256403 | 10.58–19.47 | Intergenic | ALOX12 | 14.46 | 0.406 |
UD, FUA, RUA | 19:26,610,610 | rs268292132 | 11.57–22.65 | Synonymous | RNASEK | Within gene | 0.471 |
UD, FUA, RUA | 19:26,662,281 | rs268256404 | 9.39–19.99 | Intron | ASGR2 | Within gene | 0.454 |
UD | 19:26,724,454 | rs268256405 | 10.33 | Intron | DLG4 | Within gene | 0.233 |
UD | 19:26,780,952 | rs268256406 | 9.40 | Downstream | ELP5 | 0.19 | 0.226 |
UD, FUA, RUA | 19:26,907,844 | rs268256408 | 7.76–10.81 | Synonymous | NLGN2 | Within gene | 0.340 |
UD, FUA, RUA | 19:27,401,023 | rs268256418 | 8.39–19.31 | Intron | GUCY2D | Within gene | 0.379 |
UD, RUA | 19:27,480,793 | rs268256419 | 12.44–18.06 | Intron | ALOXE3 | Within gene | 0.418 |
UD, RUA | 19:27,529,983 | rs268256420 | 10.98–16.18 | Intron | VAMP2 | Within gene | 0.407 |
UD | 19:27,558,520 | rs268256421 | 9.18 | Intron | TMEM107 | Within gene | 0.308 |
UD | 19:27,605,322 | rs268256422 | 9.04 | Intron | CTC1 | Within gene | 0.288 |
UD, RUA | 19:27,646,998 | rs268256423 | 7.39–10.66 | Upstream | SLC25A35 | 1.18 | 0.254 |
UD, RUA | 19:28,038,645 | rs268256430 | 10.58–14.48 | Intron | PIK3R6 | Within gene | 0.458 |
UD | 19:28,202,268 | rs268256435 | 7.57 | Intergenic | NTN1 | 5.68 | 0.350 |
UD | 19:28,348,471 | rs268241939 | 7.51 | Intron | NTN1 | Within gene | 0.266 |
UD | 19:28,832,418 | rs268241930 | 8.56 | Intron | GAS7 | Within gene | 0.360 |
UD | 19:28,953,102 | rs268241927 | 9.13 | Intron | GAS7 | Within gene | 0.270 |