Skip to main content

Table 2 Lead eVariants are STR variation in both two population

From: Mapping short tandem repeats for liver gene expression traits helps prioritize potential causal variants for complex traits in pigs

Gene F6 Population F7 Population
Top STR STR Motif STR P value Lead SNP P value Top STR STR Motif STR P value Lead SNP P value
ABTB1 chr13_71590920 AAAAAC 3.47E-27 2.67E-20 chr13_71590920 AAAAAC 2.63E-20 8.08E-19
ASB5 chr15_38935294 A 3.18E-16 2.74E-12 chr15_38935294 A 3.49E-17 1.64E-15
NDUFS5 chr6_94905102 T 9.74E-13 4.07E-07 chr6_94905102 T 4.83E-09 1.48E-03
MPG chr3_40870942 GT 3.10E-06 5.14E-04 chr3_40870942 GT 4.54E-05 6.64E-05
CARD19 chr3_42640896 AT 3.16E-09 8.90E-08 chr3_42631785 AAC 8.66E-23 7.13E-22
KNJ18 chr12_61287890 AC 6.32E-09 2.82E-07 chr12_61381584 CTTTTT 3.10E-08 9.50E-08
RTTN chr1_152545549 A 1.10E-07 7.15E-07 chr1_152565420 ATATG 1.50E-10 7.52E-10
IL33 chr1_215813132 T 4.50E-06 6.36E-05 chr1_215772135 A 2.23E-08 7.58E-07
BCKDK chr3_17408094 GTTT 3.99E-12 1.56E-11 chr3_16931186 GGT 8.45E-08 8.64E-08
RAB4B chr6_49976424 ACGGAG 3.10E-06 1.42E-05 chr6_48707226 A 1.10E-05 5.11E-05
SNX33 chr7_58078861 CGG 1.91E-08 1.46E-06 chr7_58006457 GT 2.13E-05 2.47E-05
ARPC5 chr9_124614177 A 2.76E-08 9.90E-08 chr9_124592786 GTT 6.38E-08 7.65E-08