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Table 2 Lead eVariants are STR variation in both two population

From: Mapping short tandem repeats for liver gene expression traits helps prioritize potential causal variants for complex traits in pigs

Gene

F6 Population

F7 Population

Top STR

STR Motif

STR P value

Lead SNP P value

Top STR

STR Motif

STR P value

Lead SNP P value

ABTB1

chr13_71590920

AAAAAC

3.47E-27

2.67E-20

chr13_71590920

AAAAAC

2.63E-20

8.08E-19

ASB5

chr15_38935294

A

3.18E-16

2.74E-12

chr15_38935294

A

3.49E-17

1.64E-15

NDUFS5

chr6_94905102

T

9.74E-13

4.07E-07

chr6_94905102

T

4.83E-09

1.48E-03

MPG

chr3_40870942

GT

3.10E-06

5.14E-04

chr3_40870942

GT

4.54E-05

6.64E-05

CARD19

chr3_42640896

AT

3.16E-09

8.90E-08

chr3_42631785

AAC

8.66E-23

7.13E-22

KNJ18

chr12_61287890

AC

6.32E-09

2.82E-07

chr12_61381584

CTTTTT

3.10E-08

9.50E-08

RTTN

chr1_152545549

A

1.10E-07

7.15E-07

chr1_152565420

ATATG

1.50E-10

7.52E-10

IL33

chr1_215813132

T

4.50E-06

6.36E-05

chr1_215772135

A

2.23E-08

7.58E-07

BCKDK

chr3_17408094

GTTT

3.99E-12

1.56E-11

chr3_16931186

GGT

8.45E-08

8.64E-08

RAB4B

chr6_49976424

ACGGAG

3.10E-06

1.42E-05

chr6_48707226

A

1.10E-05

5.11E-05

SNX33

chr7_58078861

CGG

1.91E-08

1.46E-06

chr7_58006457

GT

2.13E-05

2.47E-05

ARPC5

chr9_124614177

A

2.76E-08

9.90E-08

chr9_124592786

GTT

6.38E-08

7.65E-08