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Table 4 Protein information of differential abundance identified in the liver of AA broilers challenged with LPS

From: Molecular mechanisms of growth depression in broiler chickens (Gallus Gallus domesticus) mediated by immune stress: a hepatic proteome study

Protein

Accession no.

Symbol ID

Sequence coverage, %

#Unique peptide

Fold change

3-hydroxyisobutyryl-CoA hydrolase mitochondrial isoform X1

gi|971404063

HIBCH

13

1

0.080

Transferase CAF17 mitochondrial

gi|303227895

IBA57

4

1

0.082

Protein-glutamine gamma-glutamyltransferase 4

gi|57530757

TGM4

5

3

0.084

Serine protease inhibitor Kazal-type 2 isoform X2

gi|971393739

SPINK2

14

1

0.130

Eukaryotic translation elongation factor 1 epsilon-1

gi|971382396

EEF1E1

7

1

0.147

Cathelicidin-3 precursor

gi|906847364

CATHL3

19

2

0.156

L-amino-acid oxidase precursor

gi|372266150

IL4I1

5

2

0.157

Chromodomain-helicase-DNA-binding protein 5 isoform X5

gi|971429121

CHD5

1

1

0.171

BTB/POZ domain-containing protein KCTD12

gi|971377767

KCTD12

4

1

0.193

Cathelicidin-2 precursor

gi|403224971

CATHL2

40

4

0.194

TBC1 domain family member 10A

gi|971422101

TBC1D10A

3

1

0.196

2-amino-3-carboxymuconate-6-semialdehyde decarboxylase isoform X2

gi|971406099

ACMSD

6

1

0.202

Ribonuclease homolog precursor

gi|56118294

RSFR

11

1

0.202

T-cell immunoglobulin and mucin domain-containing protein 4 precursor

gi|57524995

TIMD4

6

2

0.212

Gallinacin-2 isoform X1

gi|971390683

GAL2

12

1

0.219

Lymphocyte antigen 86 precursor

gi|52138689

LY86

9

1

0.220

28S ribosomal protein S22 mitochondrial

gi|971410189

MRPS22

3

1

0.261

Ubiquilin-1 isoform X1

gi|118104137

UBQLN1

1

1

0.270

Serine/threonine-protein kinase 4 isoform X1

gi|971427386

STK4

2

1

0.272

Myeloid protein 1 precursor

gi|758818508

MIM1

32

8

0.273

FAS-associated death domain protein

gi|118091445

FADD

7

1

0.280

Protein MRP-126

gi|760997140

S100A9

25

3

0.304

Lysozyme g precursor

gi|47825389

LYG2

11

2

0.313

PREDICTED: Acetyl-CoA carboxylase isoform X2

gi|971425697

ACAC

4

6

0.322

Phosphomannomutase 2

gi|71895479

PMM2

4

1

0.324

Hydroxyacid-oxoacid transhydrogenase mitochondrial isoform X1

gi|971384192

ADHFE1

8

2

0.333

Serine/arginine-rich splicing factor 2

gi|47604918

SRSF2

8

1

0.337

Tyrosine-protein kinase Lyn

gi|57530388

LYN

3

1

0.347

Trifunctional purine biosynthetic protein adenosine-3

gi|47825387

GART

5

1

0.351

59 kDa 2′-5′-oligoadenylate synthase-like protein isoform X1

gi|971415867

OASL

3

1

0.351

Antigen peptide transporter 2 isoform X1

gi|971422259

TAP2

2

1

0.359

Dynein light chain roadblock-type 1 isoform X1

gi|971427252

DYNLRB1

12

1

0.372

Gallinacin-7 preproprotein

gi|48976031

AvBD7

15

1

0.378

Fibrinogen gamma chain precursor

gi|766944255

FGG

41

13

0.386

Splicing factor 3B subunit 6

gi|50745107

SF3B6

10

1

0.387

Pre-mRNA-processing factor 39 isoform X1

gi|363734910

PRPF39

2

1

0.387

Glutaredoxin-1

gi|45384038

GLRX

10

1

0.387

Phosphoglucomutase-2

gi|71897287

PGM2

4

1

0.389

Chloride intracellular channel protein 2

gi|71895359

CLIC2

16

2

0.390

Metallothionein-3

gi|147901436

MT3

19

1

0.393

Fructose-bisphosphate aldolase C

gi|330417943

ALDOC

23

4

0.401

GTP cyclohydrolase 1 feedback regulatory protein

gi|313747529

GCHFR

20

1

0.405

Proteasome subunit alpha type-3

gi|57529899

PSMA3

5

1

0.415

Heterogeneous nuclear ribonucleoprotein M isoform X2

gi|971435624

HNRNPM

8

1

0.416

Protein phosphatase 1 regulatory subunit 42 isoform X2

gi|118087042

PPP1R42

3

1

0.422

Sorcin

gi|124249424

SRI

12

2

0.425

Gallinacin-1 alpha precursor

gi|45384510

GAL1

12

1

0.428

Fibrinogen beta chain precursor

gi|267844833

FGB

37

13

0.437

Acid ceramidase precursor

gi|57530079

ASAH1

3

1

0.438

Cytochrome P450 2D3-like

gi|307078128

CYP2D6

2

1

0.447

Antigen peptide transporter 1

gi|209863064

TAP1

2

1

0.450

Integrin alpha-V-like

gi|971443478

LOC107056639

7

1

0.458

Protein O-GlcNAcase isoform X1

gi|971402723

MGEA5

1

1

0.458

Dihydropteridine reductase

gi|57529509

QDPR

16

2

0.461

RNA-binding protein 39 isoform X2

gi|513217267

RBM39

2

1

0.461

Neutral alpha-glucosidase AB-like

gi|971451761

LOC107051327

9

1

0.464

Complement 4 precursor

gi|116175422

C4

2

2

0.466

Fibrinogen alpha chain isoform 1 precursor

gi|429484490

FGA

13

6

0.468

Guanylate-binding protein 1-like

gi|971415657

GBP4L

2

1

0.470

F-box only protein 6

gi|971429573

FBXO6

4

1

0.471

Erythroblast NAD(P)(+)--arginine ADP-ribosyltransferase isoform X2

gi|513166631

ART7C

3

1

0.473

Carbonyl reductase [NADPH] 1 isoform X1

gi|971375185

CBR1

30

5

0.482

D-2-hydroxyglutarate dehydrogenase mitochondrial

gi|971410344

D2HGDH

2

1

0.485

Protein LOC107050412

gi|971449891

LOC107050412

4

1

0.487

Protein GIMAP1

gi|971379314

GIMAP1

1

1

0.487

Peroxisomal trans-2-enoyl-CoA reductase

gi|57529732

PECR

7

1

0.495

Filamin-B isoform X1

gi|971415729

FLNB

2

2

0.505

D-dopachrome decarboxylase

gi|71897241

DDT

11

1

0.508

V-type proton ATPase subunit E 1

gi|57525423

ATP6V1E1

12

2

0.511

Choline dehydrogenase mitochondrial isoform X1

gi|513205065

CHDH

1

1

0.526

ATP-dependent RNA helicase DDX24

gi|971400168

DDX24

1

1

0.527

26S proteasome non-ATPase regulatory subunit 9

gi|57525182

PSMD9

6

1

0.534

NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 mitochondrial isoform X2

gi|971398316

NDUFS3

9

2

0.540

Alanine--glyoxylate aminotransferase 2 mitochondrial

gi|513228840

AGXT2

7

2

0.553

Ornithine aminotransferase mitochondrial

gi|57529515

OAT

4

1

0.561

Metallothionein

gi|46048711

MT1

43

3

0.576

60S ribosomal protein L19

gi|71896335

RPL19

9

1

0.589

Epididymal secretory protein E1 precursor

gi|71894903

NPC2

14

1

0.603

Long-chain fatty acid transport protein 4

gi|971423093

SLC27A4

2

1

0.616

Glutaredoxin-3

gi|475506756

GLRX3

4

1

0.617

Cytoplasmic FMR1-interacting protein 1 isoform X2

gi|971376600

CYFIP1

1

1

0.624

Diamine acetyltransferase 2-like

gi|971451573

LOC107051219

23

2

0.631

Platelet glycoprotein 4

gi|71897003

CD36

3

1

0.646

Ras-related protein Rab-10

gi|71895051

RAB10

6

1

1.543

Iron-sulfur cluster assembly enzyme ISCU mitochondrial

gi|971421427

ISCU

11

1

1.574

Nucleophosmin

gi|45383996

NPM1

22

5

1.601

40S ribosomal protein S11

gi|71895103

RPS11

15

2

1.654

UBX domain-containing protein 4 isoform X4

gi|513195319

UBXN4

3

1

1.757

C-factor-like isoform X2

gi|363738106

LOC415662

38

6

1.765

Sodium-coupled neutral amino acid transporter 4 isoform X1

gi|971370947

SLC38A4

2

1

2.005

UDP-glucose 4-epimerase

gi|363742411

GALE

3

1

2.086

Protein disulfide-isomerase A4

gi|57530768

PDIA4

7

5

2.091

Band 4.1-like protein 2 isoform X4

gi|971387884

EPB41L2

1

1

2.092

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1

gi|480540334

NDUFB1

19

1

2.118

Granulysin precursor

gi|113206146

GNLY

30

3

2.139

Aspartyl aminopeptidase

gi|61098378

DNPEP

4

2

2.149

GTPase IMAP family member 5

gi|971379352

GIMAP5

4

1

2.180

Regucalcin isoform X1

gi|971376431

RGN

30

7

2.180

ATP-citrate synthase isoform X3

gi|971435352

ACLY

6

5

2.206

Glutathione S-transferase alpha 4 isoform X1

gi|971389828

GSTA4L

10

2

2.241

Adrenodoxin mitochondrial

gi|310832417

FDX1

5

1

2.574

Protein syndesmos precursor

gi|45382147

SDC4

8

2

2.723

Interferon alpha-inducible protein 6

gi|47777293

IFI6

89

6

3.222

Regulator of microtubule dynamics protein 1

gi|475808820

RMDN1

22

6

3.671

Proteasome subunit beta type-7

gi|45383366

PSMB7

5

1

3.850

Tetratricopeptide repeat protein 38-like

gi|363728070

TTC38L

3

1

4.244

Glutathione S-transferase theta-1-like

gi|971421234

GSTT1L

11

2

4.318

ADP/ATP translocase 1

gi|57530120

SLC25A4

7

2

5.735

Interferon-induced GTP-binding protein Mx

gi|45382939

MX

5

2

5.960

Cytochrome P450 2H2 precursor

gi|48976111

CYP2C23b

28

11

6.432

Trifunctional purine biosynthetic protein adenosine-3 isoform X1

gi|971375154

GART

5

4

+∞