Table 3 Beta diversity. Permutational multivariate analysis of variance (Adonis) and Analysis of similarity (ANOSIM) on weighted and unweighted UniFrac distances of feed, gut mucosa (GMMC), and skin mucus microbial communities (SMMC) at genus level
Items | Adonis | ANOSIM | ||||||
|---|---|---|---|---|---|---|---|---|
Unweighted | Weighted | Unweighted | Weighted | |||||
P-value | R2 | P-value | R2 | P-value | R | P-value | R | |
Feeds | ||||||||
 diet TM 0 vs. diet TM 100 | 0.038 | 0.33 | 0.034 | 0.42 | 0.023 | 0.38 | 0.029 | 0.53 |
GMMC | ||||||||
 TM 0 vs. TM 100 | 0.315 | 0.11 | 0.025 | 0.37 | 0.339 | 0.04 | 0.038 | 0.25 |
 TM 0 vs. diet TM 0 | 0.004 | 0.72 | 0.007 | 0.64 | 0.005 | 1.0 | 0.008 | 0.92 |
 TM 100 vs. diet TM 100 | 0.006 | 0.66 | 0.003 | 0.99 | 0.004 | 1.0 | 0.007 | 1.0 |
SMMC | ||||||||
 TM 0 vs. TM 100 | 0.525 | 0.08 | 0.274 | 0.11 | 0.456 | 0.00 | 0.140 | 0.11 |
 TM 0 vs. diet TM 0 | 0.006 | 0.73 | 0.011 | 0.86 | 0.007 | 1.0 | 0.004 | 1.0 |
 TM 100 vs. diet TM 100 | 0.004 | 0.48 | 0.003 | 0.82 | 0.011 | 0.58 | 0.005 | 1.0 |