Table 4 Changes of transcription factor binding site (TFBS) caused by the SNP in the 5′untranslated (UTR) and flanking regions of AGPAT3
SNP | Sequence | Ttranscription factor | Name |
|---|---|---|---|
g.146702957G > A | TCCCTGTGCCGTTTCCACTGA | VMYB | v-Myb, variant of AMV v-myb |
TCCCTGTGCCATTTCCACTGA | SMARCA3 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 3 | |
REX1 | REX1 transcription factor; zinc finger protein 42 | ||
g.146704373A > G | CACGGGAAGTAAGGTGTGCAGT | BRACH | Brachyury |
CACGGGAAGTGGGTGTGCAGT | NKX26 | NK2 homeobox 6, Csx2 | |
g.146704618A > G | CTCTTCCACCACCCTGGACAG | ||
CTCTTCCACCGCCCTGGACAG | ZBED4 | Zinc finger, BED-type containing 4; GC-box binding sites | |
SP1 | Stimulating protein 1, ubiquitous zinc finger transcription factor | ||
g.146704699G > A | AATGGGAAACGTGACAGGATT | USF1 | Upstream stimulating factor 1 |
ARNT | AhR nuclear translocator homodimers | ||
AATGGGAAACATGACAGGATT | FOXA1 | Forkhead box protein A1, hepatocyte nuclear factor 3-alpha (HNF-3-alpha) |