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Fig. 2 | Journal of Animal Science and Biotechnology

Fig. 2

From: Multi-omics-data-assisted genomic feature markers preselection improves the accuracy of genomic prediction

Fig. 2

Prediction accuracies of the starvation resistance using S_eQTL_S strategy with different P-value cutoffs. S_eQTL_S represents SNPs preselected from WGS data based on the results of the eQTL mapping of significant genes. The Y axis represents the Pearson correlation between the predicted genetic values and the phenotypic values for each trait in the validation sets. Both the X axis and the different colors of box plots represent the SNP datasets preselected from whole genome sequencing data using different P-value cutoffs based on the results of the eQTL mapping of significant genes from a transcriptome-wide association study (TWAS). GBLUP-Female and GBLUP-Male refer to performing genomic best linear unbiased prediction (GBLUP) on the female and male lines. GFBLUP-Female and GFBLUP-Male refer to performing genomic feature best linear unbiased prediction (GFBLUP) on the female and male lines. TWAS (P < cutoffs) refers to using the P-value cutoffs to preselect significant genes from TWAS. Black lines indicate the trend of the average accuracy in different scenarios

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