Table 5 The differential bacteria among CON, AGP, and ABP identified using the Mann-Whitney U test
Bacteria | ABP | AGP | log2FC | Wilcox.test. P-value |
|---|---|---|---|---|
ABP vs. AGP | ||||
 Phylum | ||||
  Proteobacteria | 0.5614 | 1.4075 | − 1.33 | 0.0472 |
 Class | ||||
  Deltaproteobacteria | 0.3681 | 0.7903 | −1.1 | 0.0472 |
 Family | ||||
  Bacillaceae 2 | 0 | 0.0147 | -Inf | 0.0186 |
  Eubacteriaceae | 4.1316 | 1.5342 | 1.43 | 0.0283 |
  Christensenellaceae | 0.1028 | 0.0456 | 1.17 | 0.0283 |
  Acidaminococcaceae | 0.0866 | 0.2892 | −1.74 | 0.0472 |
  Gracilibacteraceae | 0.0062 | 0.0027 | 1.2 | 0.0472 |
 Genus | ||||
Christensenella | 0.083 | 0.0272 | 1.61 | 0.009 |
Bacillaceae 2 unclassified | 0 | 0.0147 | -Inf | 0.0186 |
Bacillus | 0 | 0.0038 | -Inf | 0.0186 |
Faecalibacterium | 3.2023 | 9.9469 | −1.64 | 0.0283 |
Eubacterium | 4.1152 | 1.525 | 1.43 | 0.0283 |
Tyzzerella | 0.0005 | 0.0069 | −3.79 | 0.0343 |
Gracilibacter | 0.0062 | 0.0027 | 1.2 | 0.0472 |
 Species | ||||
Uncultured Christensenella sp. | 0.0547 | 0.0097 | 2.5 | 0.0163 |
Bacillaceae 2 unclassified | 0 | 0.0147 | -Inf | 0.0186 |
Bacillus sp. CW27-B01 | 0 | 0.0038 | -Inf | 0.0186 |
Anaeromassilibacillus sp. Marseille-P4683 | 0.0004 | 0.0037 | −3.21 | 0.0236 |
Uncultured Eubacterium sp. | 4.1146 | 1.5238 | 1.43 | 0.0283 |
Clostridium colinum | 0.0005 | 0.0069 | −3.79 | 0.0343 |
Faecalibacterium prausnitzii | 1.82 | 5.116 | −1.49 | 0.0472 |
Alistipes unclassified | 3.8294 | 1.5695 | 1.29 | 0.0472 |
Uncultured Gracilibacter sp. | 0.0062 | 0.0027 | 1.2 | 0.0472 |
ABP vs. CON | ||||
 Family | ||||
  Prevotellaceae | 0 | 0.0496 | -Inf | 0.0186 |
 Genus | ||||
Holdemania | 0.0189 | 0.0618 | −1.71 | 0.009 |
Tyzzerella | 0.0005 | 0.0199 | −5.31 | 0.0132 |
Prevotella | 0 | 0.0496 | -Inf | 0.0186 |
 Species | ||||
Anaeromassilibacillus sp. Marseille-P4683 | 0.0004 | 0.0084 | −4.39 | 0.0071 |
Holdemania filiformis | 0.0189 | 0.0618 | −1.71 | 0.009 |
Clostridium colinum | 0.0005 | 0.0199 | −5.31 | 0.0132 |
Clostridium asparagiforme | 0.0064 | 0.0007 | 3.19 | 0.016 |
Prevotella lascolaii | 0 | 0.0496 | -Inf | 0.0186 |
Helicobacter cf. pullorum | 0 | 0.0028 | -Inf | 0.0186 |
Uncultured Christensenella sp. | 0.0547 | 0.0129 | 2.08 | 0.0283 |
AGP vs. CON | ||||
 Family | ||||
  Bacillaceae 2 | 0.0147 | 0 | Inf | 0.0186 |
  Christensenellaceae | 0.0456 | 0.0714 | −0.65 | 0.0472 |
 Genus | ||||
Bacillaceae 2 unclassified | 0.0147 | 0 | Inf | 0.0186 |
Bacillus | 0.0038 | 0.0001 | 5.25 | 0.0343 |
 Species | ||||
Parasutterella secunda | 0 | 0.0668 | -Inf | 0.0186 |
Bacillaceae 2 unclassified | 0.0147 | 0 | Inf | 0.0186 |
Clostridium sp. enrichment culture clone 06–1,235,251-143 | 0.0032 | 0.001 | 1.68 | 0.0278 |
Sporobacter termitidis | 0.2204 | 0.8674 | −1.98 | 0.0283 |
Bacillus sp. CW27-B01 | 0.0038 | 0.0001 | 5.25 | 0.0343 |
Uncultured Peptococcus sp. | 0.0056 | 0.0285 | −2.35 | 0.0472 |