CNV analysis of Meishan pig by next-generation sequencing and effects of AHR gene CNV on pig reproductive traits

Table 3 Comparison of CNVRs identified in this study to results from other studies (based on the Sscrofa 11.1 genome assembly)

Platform	Study	Breeds	Samples	No. of CNVRs (NO. before mapping)	No. of overlapped CNVRs from this study	Percent of overlapped CNVRs from this study
Next-generation sequencing	[12]	2	7	416 (540)	107	0.84%
Next-generation sequencing	[34]	2	16	2,265 (3,118)	262	2.07%
Next-generation sequencing	[13]	10	13	1,903 (3,131)	585	4.62%
Porcine SNP60	[11]	18	1693	243 (565)	153	1.21%
Next-generation sequencing	[14]	7	14	754 (1,408)	254	2.00%
1 M aCGH	[35]	9	12	436 (758)	180	1.42%
Next-generation sequencing	[36]	13	49	1,906 (3,131)	172	1.36%
Next-generation sequencing	[15]	3	240	3,538	449	3.54%
This Study				12,668

Note: CNVRs were converted to Sscrofa 11.1 coordinates using the liftOver tool. Successfully mapped CNVRs are shown in the CNVRs column with the original number of published CNVRs (Sscrofa 10.2) shown in parentheses

ISSN: 2049-1891