Table 3 Quantitative trait loci (QTL) associated with milk traits recorded in Murciano-Granadina goats
From: Analyzing the genomic and transcriptomic architecture of milk traits in Murciano-Granadina goats
QTL | Chromosome | Leading SNP | Position, Mb | #SNPs | MAF | Trait | β ± SE | P value | q-value |
|---|---|---|---|---|---|---|---|---|---|
1 | 2 | rs268253425 | 130.72-130.01 | 2 | 0.20 | LP | −0.09 ± 0.02 | 1.50E-07 | 7.26E-03 |
2 | 3 | rs268258472 | 113.47 | 1 | 0.38 | LOL | −14.20 ± 3.21 | 1.04E-05 | 2.38E-02 |
3 | 6 | rs268259784 | 4.40 | 1 | 0.35 | PP | 0.07 ± 0.02 | 8.21E-04 | 4.09E-02 |
4 | 6 | rs268251267 | 15.64 | 1 | 0.24 | PP | 0.08 ± 0.03 | 7.85E-04 | 4.00E-02 |
5 | 6 | rs268259390 | 56.51 | 1 | 0.02 | DMP | 1.08 ± 0.26 | 4.56E-05 | 3.56E-02 |
PP | 0.29 ± 0.07 | 6.52E-05 | 8.48E-03 | ||||||
6 | 6 | rs268290907 | 78.90-93.48 | 12 | 0.43 | PP | −0.14 ± 0.02 | 3.19E-11 | 1.54E-06 |
6 | rs268268356 | 84.67–86.86 | 2 | 0.40 | DMP | −0.35 ± 0.08 | 1.14E-05 | 2.66E-02 | |
6 | rs268290907 | 86.86 | 1 | 0.43 | FP | −0.18 ± 0.04 | 5.79E-06 | 1.36E-02 | |
7 | 11 | rs268250457 | 72.83 | 1 | 0.41 | LOL | 15.23 ± 3.30 | 4.40E-06 | 9.13E-03 |
8 | 12 | rs268256521 | 68.10 | 1 | 0.12 | LOL | −20.35 ± 4.76 | 2.07E-05 | 3.50E-02 |
9 | 13 | rs268236131 | 53.62-54.38 | 2 | 0.32 | SCC | 0.22 ± 0.05 | 1.92E-05 | 3.05E-02 |
11 | 14 | rs268255959 | 46.10 | 1 | 0.09 | LP | −0.10 ± 0.02 | 2.56E-05 | 4.77E-02 |
10 | 14 | rs268282962 | 56.92 | 1 | 0.01 | FP | 0.78 ± 0.18 | 1.78E-05 | 3.32E-02 |
12 | 15 | rs268235117 | 34.69 | 1 | 0.06 | MY210 | −61.98 ± 13.53 | 4.95E-06 | 7.91E-03 |
13 | 15 | rs268290053 | 35.51 | 1 | 0.07 | FP | 0.35 ± 0.08 | 4.82E-06 | 7.69E-03 |
14 | 15 | rs268266747 | 63.95 | 1 | 0.23 | SCC | 0.23 ± 0.05 | 1.63E-05 | 2.60E-02 |
15 | 16 | rs268236985 | 39.59 | 1 | 0.04 | DMP | 0.81 ± 0.20 | 6.39E-05 | 4.93E-02 |
16 | 16 | rs268253363 | 47.67 | 1 | 0.21 | DMP | 0.42 ± 0.10 | 1.70E-05 | 2.62E-02 |
17 | 17 | rs268238952 | 11.20 | 1 | 0.06 | PP | 0.22 ± 0.05 | 4.84E-06 | 2.13E-02 |
DMP | 0.88 ± 0.17 | 3.89E-07 | 1.88E-02 | ||||||
18 | 18 | rs268278435 | 29.64 | 1 | 0.04 | DMP | 0.84 ± 0.19 | 1.33E-05 | 1.70E-02 |
19 | 20 | rs268277231 | 29.45 | 1 | 0.08 | LP | −0.11 ± 0.03 | 3.35E-05 | 4.84E-02 |
20 | 22 | rs268253724 | 25.30 | 1 | 0.36 | FP | −0.18 ± 0.04 | 4.14E-05 | 4.68E-02 |
21 | 23 | rs268243170 | 8.15 | 1 | 0.45 | MY210 | 29.89 ± 6.76 | 1.03E-05 | 1.01E-02 |
22 | 24 | rs268240589 | 49.71 | 1 | 0.32 | LP | 0.07 ± 0.02 | 9.51E-06 | 1.23E-02 |
23 | 28 | rs268240830 | 23.02 | 1 | 0.42 | LP | −0.06 ± 0.01 | 7.16E-05 | 1.66E-02 |
24 | 28 | rs268246445 | 41.15-41.42 | 4 | 0.51 | LP | −0.06 ± 0.01 | 3.21E-05 | 1.51E-02 |