Table 2 Enriched pathways in the set of 1,654 differentially expressed genes (T1-T2, T1-T3 and T2-T3)
From: Analyzing the genomic and transcriptomic architecture of milk traits in Murciano-Granadina goats
Name | Human background gene set | Goat background gene set | ||||||
|---|---|---|---|---|---|---|---|---|
Number | P value | Fold enrichment | q-value | Number | P value | Fold enrichment | q-value | |
PPAR signaling pathway | 18 | 2.01E-06 | 3.86 | 2.65E-05 | 22 | 8.86E-08 | 3.84 | 1.16E-06 |
Steroid biosynthesis | 9 | 3.06E-05 | 6.46 | 4.03E-04 | 10 | 2.58E-05 | 5.63 | 3.38E-04 |
Complement and coagulation cascades | 16 | 5.85E-05 | 3.33 | 7.70E-04 | 18 | 2.78E-05 | 3.19 | 3.65E-04 |
Metabolic pathways | 116 | 1.75E-04 | 1.37 | 2.30E-03 | 141 | 6.68E-06 | 1.41 | 8.78E-05 |
Biosynthesis of antibiotics | 28 | 1.49E-03 | 1.90 | 1.95E-02 | 30 | 2.58E-03 | 1.78 | 3.34E-02 |
Adipocytokine signaling pathway | 13 | 2.89E-03 | 2.67 | 3.73E-02 | 14 | 3.46E-03 | 2.48 | 4.45E-02 |