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Table 1 microRNAs detected by edgeR as differentially expressed when comparing AL-T0 (fasted) gilts with their AL-T1 (5 h after eating) and AL-T2 (7 h after eating) counterparts

From: Co-expression network analysis predicts a key role of microRNAs in the adaptation of the porcine skeletal muscle to nutrient supply

Contrast miRNA log2FCb P-value q-valuec log2CPM AL-T0d log2CPM AL-T1d log2CPM AL-T2d
AL-T0/AL-T1a ssc-miR-7-5p 0.9978 7.56E-05 2.16E-02 6.8416 7.5115
ssc-miR-374a-3p 0.8568 4.73E-04 3.81E-02 6.9201 7.5034
ssc-miR-7 0.9229 5.26E-04 3.81E-02 6.4206 7.0178
ssc-miR-148a-3p 0.8989 5.97E-04 3.81E-02 13.8692 14.5105
ssc-miR-1 0.7686 6.66E-04 3.81E-02 16.8124 17.3183
ssc-miR-32 1.2420 9.92E-04 4.73E-02 2.9824 3.6098
AL-T0/AL-T2a ssc-miR-1285 −2.9830 3.47E-09 9.92E-07 7.9799 5.5849
ssc-miR-148a-3p 1.3831 2.39E-06 2.83E-04 13.8692 14.9315
ssc-miR-7-5p 1.1592 2.97E-06 2.83E-04 6.8416 7.6948
ssc-miR-493-5p 0.7464 3.84E-05 2.37E-03 6.4846 7.1191
ssc-miR-7 1.0724 4.14E-05 2.37E-03 6.4206 7.1910
ssc-miR-22-3p −0.9814 1.01E-04 4.20E-03 12.6857 11.7583
ssc-miR-421-5p 1.2893 1.03E-04 4.20E-03 2.6775 3.7359
ssc-miR-758 −0.7536 1.24E-04 4.43E-03 5.4106 4.5480
ssc-miR-339 −0.8760 1.68E-04 5.34E-03 2.8919 2.0274
ssc-let-7f-1 0.7735 2.36E-04 6.43E-03 14.0981 14.7031
ssc-let-7f-5p 0.7641 2.74E-04 6.43E-03 12.4788 13.0761
ssc-miR-374a-3p 0.9025 2.75E-04 6.43E-03 6.9201 7.5867
ssc-miR-30a-3p 0.6600 3.36E-04 6.43E-03 9.8397 10.3833
ssc-miR-151-3p 0.6940 3.37E-04 6.43E-03 12.3832 12.9732
ssc-miR-129a-3p −1.3858 4.09E-04 7.05E-03 4.7123 3.0830
ssc-miR-296-5p −0.9342 4.79E-04 7.61E-03 5.1094 3.9239
ssc-miR-30e-3p 0.6430 7.45E-04 1.12E-02 10.8497 11.3840
ssc-miR-98 0.7127 1.24E-03 1.69E-02 9.6818 10.2075
ssc-let-7a-1 0.4660 1.13E-03 2.53E-02 13.7761 14.1002
ssc-let-7a-2 0.4590 1.43E-03 2.53E-02 12.4875 12.8046
ssc-miR-503 0.4912 1.12E-03 2.53E-02 7.8380 8.1776
ssc-miR-181c −0.6665 2.02E-03 2.56E-02 3.0770 2.3722
ssc-miR-32 1.1189 2.11E-03 2.56E-02 2.9824 3.5525
ssc-miR-1 0.6586 2.15E-03 2.56E-02 16.8124 17.2479
ssc-miR-450b-3p 0.9689 2.78E-03 2.95E-02 1.3512 2.0993
ssc-miR-136-5p 0.9319 2.78E-03 2.95E-02 3.4211 3.8968
ssc-miR-7857-3p −1.1003 3.03E-03 3.09E-02 2.3255 1.5283
ssc-miR-125b −0.5858 1.88E-03 3.20E-02 13.0432 12.3566
ssc-miR-361-5p −0.5109 3.02E-03 4.45E-02 7.4597 6.8061
ssc-miR-362 −0.5567 3.45E-03 4.61E-02 6.5327 5.8194
ssc-miR-218b 0.7746 4.75E-03 4.62E-02 4.8429 5.2796
ssc-miR-532-3p −0.6865 4.84E-03 4.62E-02 7.4422 6.5930
ssc-miR-365-3p −0.7367 5.36E-03 4.79E-02 9.9681 8.9921
  1. aAL-T0: Duroc gilts in a fasting condition (N = 11); AL-T1: Duroc gilts slaughtered after 5 h of food intake (N = 12); AL-T2: Duroc gilts slaughtered after 7 h of food intake (N = 12)
  2. bLog2FC: estimated log2 fold change mean expression levels
  3. cq-value: P-value corrected for multiple testing with the Benjamini-Hochberg procedure
  4. dLog2CPM: estimated log2 counts-per-million (CPM) mean expression levels in AL-T0, AL-T1 and AL-T2 groups