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Table 1 microRNAs detected by edgeR as differentially expressed when comparing AL-T0 (fasted) gilts with their AL-T1 (5 h after eating) and AL-T2 (7 h after eating) counterparts

From: Co-expression network analysis predicts a key role of microRNAs in the adaptation of the porcine skeletal muscle to nutrient supply

ContrastmiRNAlog2FCbP-valueq-valueclog2CPM AL-T0dlog2CPM AL-T1dlog2CPM AL-T2d
AL-T0/AL-T1assc-miR-7-5p0.99787.56E-052.16E-026.84167.5115
ssc-miR-374a-3p0.85684.73E-043.81E-026.92017.5034
ssc-miR-70.92295.26E-043.81E-026.42067.0178
ssc-miR-148a-3p0.89895.97E-043.81E-0213.869214.5105
ssc-miR-10.76866.66E-043.81E-0216.812417.3183
ssc-miR-321.24209.92E-044.73E-022.98243.6098
AL-T0/AL-T2assc-miR-1285−2.98303.47E-099.92E-077.97995.5849
ssc-miR-148a-3p1.38312.39E-062.83E-0413.869214.9315
ssc-miR-7-5p1.15922.97E-062.83E-046.84167.6948
ssc-miR-493-5p0.74643.84E-052.37E-036.48467.1191
ssc-miR-71.07244.14E-052.37E-036.42067.1910
ssc-miR-22-3p−0.98141.01E-044.20E-0312.685711.7583
ssc-miR-421-5p1.28931.03E-044.20E-032.67753.7359
ssc-miR-758−0.75361.24E-044.43E-035.41064.5480
ssc-miR-339−0.87601.68E-045.34E-032.89192.0274
ssc-let-7f-10.77352.36E-046.43E-0314.098114.7031
ssc-let-7f-5p0.76412.74E-046.43E-0312.478813.0761
ssc-miR-374a-3p0.90252.75E-046.43E-036.92017.5867
ssc-miR-30a-3p0.66003.36E-046.43E-039.839710.3833
ssc-miR-151-3p0.69403.37E-046.43E-0312.383212.9732
ssc-miR-129a-3p−1.38584.09E-047.05E-034.71233.0830
ssc-miR-296-5p−0.93424.79E-047.61E-035.10943.9239
ssc-miR-30e-3p0.64307.45E-041.12E-0210.849711.3840
ssc-miR-980.71271.24E-031.69E-029.681810.2075
ssc-let-7a-10.46601.13E-032.53E-0213.776114.1002
ssc-let-7a-20.45901.43E-032.53E-0212.487512.8046
ssc-miR-5030.49121.12E-032.53E-027.83808.1776
ssc-miR-181c−0.66652.02E-032.56E-023.07702.3722
ssc-miR-321.11892.11E-032.56E-022.98243.5525
ssc-miR-10.65862.15E-032.56E-0216.812417.2479
ssc-miR-450b-3p0.96892.78E-032.95E-021.35122.0993
ssc-miR-136-5p0.93192.78E-032.95E-023.42113.8968
ssc-miR-7857-3p−1.10033.03E-033.09E-022.32551.5283
ssc-miR-125b−0.58581.88E-033.20E-0213.043212.3566
ssc-miR-361-5p−0.51093.02E-034.45E-027.45976.8061
ssc-miR-362−0.55673.45E-034.61E-026.53275.8194
ssc-miR-218b0.77464.75E-034.62E-024.84295.2796
ssc-miR-532-3p−0.68654.84E-034.62E-027.44226.5930
ssc-miR-365-3p−0.73675.36E-034.79E-029.96818.9921
  1. aAL-T0: Duroc gilts in a fasting condition (N = 11); AL-T1: Duroc gilts slaughtered after 5 h of food intake (N = 12); AL-T2: Duroc gilts slaughtered after 7 h of food intake (N = 12)
  2. bLog2FC: estimated log2 fold change mean expression levels
  3. cq-value: P-value corrected for multiple testing with the Benjamini-Hochberg procedure
  4. dLog2CPM: estimated log2 counts-per-million (CPM) mean expression levels in AL-T0, AL-T1 and AL-T2 groups