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Table 3 The DEGs and biological pathways regulated in treatment groups (Control vs. 39 °C, Control vs. 40 °C, Control vs. 41 °C)

From: Evaluation of heat stress effects on cellular and transcriptional adaptation of bovine granulosa cells

Pathway name

Gene count

P-value

Gene name

Control vs. 39 °C

 Protein processing in endoplasmic reticulum

13

1.23E-07

HSP90AB1, TRAF2, HSPH1, ATF4, HSP90B1, HSP90AA1, RNF5, BAX, RNF185, EDEM2, EIF2AK4, HSPA8, BCAP31

 FoxO signaling pathway

9

5.74E-05

PLK1, CCND2, MDM2, CAT, FOXO3, G6PC3, CDK2, SOD2

 Pathways in cancer

13

7.19E-04

HSP90AB1, TRAF2, CASP3, HSP90B1, HSP90AA1, BAX, GNB5, MDM2, BCL2L1, NFKB2, FGF12, CRK, CDK2

 PI3K-Akt signaling pathway

12

7.77E-04

HSP90AB1, ATF4, HSP90B1, HSP90AA1, CCND2, GNB5, MDM2, FOXO3, BCL2L1, FGF12, G6PC3, CDK2

 Antigen processing and presentation

6

9.96E-04

HSP90AB1, HSP90AA1, NFYC, IFI30, HSPA4, HSPA8

 bta05215:Prostate cancer

6

1.80E-03

HSP90AB1, ATF4, HSP90B1, HSP90AA1, MDM2, CDK2

 Amyotrophic lateral sclerosis (ALS)

5

2.20E-03

CASP3, BAX, CAT, BCL2L1, SOD1

 Apoptosis

5

3.70E-03

CASP6, TRAF2, CASP3, BAX, BCL2L1

 MAPK signaling pathway

9

4.70E-03

TRAF2, CASP3, ATF4, MAPK8IP1, NFKB2, FGF12, CRK, HSPA8, PPP5C

 p53 signaling pathway

5

6.00E-03

CASP3, CCND2, BAX, MDM2, CDK2

 Aldosterone synthesis and secretion

5

8.70E-03

ATF4, CYP11A1, STAR, SCARB1, ATF1

 Viral carcinogenesis

8

0.010

TRAF2, CASP3, ATF4, CCND2, BAX, MDM2, NFKB2, CDK2

 Ovarian steroidogenesis

4

0.014

CYP11A1, STAR, SCARB1, BMP6

 Estrogen signaling pathway

5

0.018

HSP90AB1, ATF4, HSP90B1, HSP90AA1, HSPA8

 Legionellosis

4

0.020

CASP3, HSPD1, NFKB2, HSPA8

 Vitamin digestion and absorption

3

0.021

BTD, ABCC1, SCARB1

 Cell cycle

5

0.039

PLK1, CCND2, PCNA, MDM2, CDK2

 Epstein-Barr virus infection

6

0.047

TRAF2, MDM2, NFKB2, CDK2, EIF2AK4, HSPA8

Control vs. 40 °C

 Ribosome

11

2.18E-04

RPS26, MRPL23, MRPL21, MRPL15, RPLP0, RPL15, MRPL36, RPS11, MRPL33, UBA52, RPS24

 Protein processing in endoplasmic reticulum

12

3.51E-04

HSP90AB1, TRAF2, HSPH1, HSP90B1, HSP90AA1, EIF2AK1, RNF5, BAX, RNF185, EDEM2, HSPA8, BCAP31

 FoxO signaling pathway

10

8.75E-04

HRAS, PLK1, CCND2, PRKAB1, CAT, FOXO3, CCNG2, CDK2, SOD2

 p53 signaling pathway

7

0.002

CASP3, CCND2, BAX, TSC2, RPRM, CCNG2, CDK2

 Antigen processing and presentation

7

0.002

HSP90AB1, CTSL, HSP90AA1, NFYC, HSPA4, RFXANK, HSPA8

 Amyotrophic lateral sclerosis (ALS)

6

0.003

CASP3, BAX, TOMM40L, CAT, BCL2L1, SOD1

 Biosynthesis of antibiotics

10

0.016

SC5D, UAP1, IDH3G, PAFAH2, PGM1, RCE1, CAT, UAP1L1, PAICS, OAT

 Base excision repair

4

0.024

LIG3, PCNA, OGG1, APEX1

 Glutathione metabolism

3

0.026

GSS, GSR, GSTA3

 Apoptosis

5

0.029

CASP6, TRAF2, CASP3, BAX, BCL2L1

 PI3K-Akt signaling pathway

12

0.035

HSP90AB1, HRAS, HSP90B1, HSP90AA1, CCND2, TSC2, GNG2, FOXO3, BCL2L1, FGF12, CDK2, GHR

 Ovarian steroidogenesis

4

0.038

CYP11A1, STAR, SCARB1, BMP6

Control vs 41 °C

 Protein processing in endoplasmic reticulum

14

1.40E-05

HSP90AB1, TRAF2, HSP90AA1, RNF185, EDEM2, BCAP31, HSPH1, HSP90B1, EIF2AK1, DNAJB11, RNF5, BAX, EIF2AK2, HSPA8

 Viral carcinogenesis

14

3.92E-04

TRAF2, CASP3, HDAC1, CCND2, DDB1, BAX, CREBBP, RHOA, PIK3CA, NFKB2, EIF2AK2, SRF, CDK2, SCRIB

 Biosynthesis of unsaturated fatty acids

5

9.11E-04

PECR, ACOT7, ELOVL5, HACD2, FADS2

 Pathways in cancer

18

0.001

HSP90AB1, DVL2, TRAF2, HSP90AA1, EPAS1, CREBBP, BCL2L1, KIT, NFKB2, CDK2, VEGFC, FOS, CASP3, HSP90B1, HDAC1, BAX, RHOA, PIK3CA

 HTLV-I infection

14

0.001

DVL2, TSPO, MRAS, CREBBP, NFKB2, BCL2L1, SRF, FOS, CCND2, BAX, PCNA, RRAS, PIK3CA, NFATC3

 FoxO signaling pathway

9

0.003

PLK1, CCND2, CREBBP, PIK3CA, CAT, FOXO3, CDK2, SOD2

 Huntington's disease

9

0.003

CASP3, HDAC1, BAX, CREBBP, NDUFV2, NDUFS3, SOD1, SOD2

 Peroxisome

6

0.004

PECR, PEX2, MPV17, CAT, SOD1, SOD2

 Apoptosis

6

0.005

CASP6, TRAF2, CASP3, BAX, PIK3CA, BCL2L1

 Hepatitis B

9

0.006

FOS, CASP3, DDB1, BAX, CREBBP, PCNA, PIK3CA, NFATC3, CDK2

 p53 signaling pathway

6

0.010

CASP3, CCND2, CD82, BAX, CDK2

 Fatty acid metabolism

5

0.011

PECR, ELOVL5, HACD2, FADS2, HADH

 Fatty acid elongation

4

0.011

ACOT7, ELOVL5, HACD2, HADH

 Cell cycle

6

0.013

HDAC1, PLK1, CCND2, CREBBP, PCNA, CDK2

 Ovarian steroidogenesis

4

0.015

CYP11A1, STAR, SCARB1, BMP6

 Amyotrophic lateral sclerosis (ALS)

5

0.017

CASP3, BAX, CAT, BCL2L1, SOD1

 TGF-beta signaling pathway

6

0.018

INHBB, INHBA, CREBBP, RHOA, TGIF2, BMP6

 MAPK signaling pathway

11

0.021

TRAF2, FOS, CASP3, MRAS, PTPRR, RRAS, MAPK8IP1, NFKB2, NFATC3, SRF, HSPA8

 Prostate cancer

6

0.021

HSP90AB1, HSP90B1, HSP90AA1, CREBBP, PIK3CA, CDK2

 Epstein-Barr virus infection

9

0.026

TRAF2, EIF2AK1, HDAC1, CREBBP, PIK3CA, NFKB2, EIF2AK2, CDK2, HSPA8

 Colorectal cancer

5

0.0339

FOS, CASP3, BAX, RHOA, PIK3CA

 Estrogen signaling pathway

6

0.0354

HSP90AB1, FOS, HSP90B1, HSP90AA1, PIK3CA, HSPA8

 Glutathione metabolism

3

0.0386

GSR, GSTA3, G6PD