Fine mapping of genomic regions associated with female fertility in Nellore beef cattle based on sequence variants from segregating sires

Table 4 Missense sequence variants concordant with the sires’ QTL status of the chromosomes (BTA) 5 and 14

BTA	Variant ID	Position	Allele	Gene	AA	SIFT
5	rs137779125	70,597,511	A	MTERF2	R/C	tol (0.16)
14	rs1116146729	20,718,306	A	–	R/W	del (0.00)
	rs518797951	21,079,097	C	PRKDC	E/G	del (0.01)
	rs41718998	21,100,385	C	PRKDC	K/R	del (0.01)
	Novel	21,620,454	A	PPDPFL	R/Q	tol (0.09)
	rs109800133	23,161,253	C	RB1CC1	T/A	tol (1.00)
	Novel	23,612,293	C	RGS20	L/P	del (0.00)
	rs461823670	23,996,758	A	RP1	G/S	tol (0.47)
	rs450031362	23,997,203	G	RP1	D/G	tol (0.11)
	rs137722134	23,998,860	G	RP1	I/R	tol (0.07)
	rs439817527	23,998,899	T	RP1	T/I	tol (1.00)
	rs109065397	21,104,637	C	PRKDC	S/G	tol (0.50)

Position = variant position in base pair; Allele = the variant allele used to calculate the consequence; Gene = gene symbol; AA = reference and variant amino acids; Codons = the alternative codons with the variant base in upper case; SIFT = SIFT prediction score; tol = tolerated; del = deleterious.

ISSN: 2049-1891