Table 3 Number of the sequenced variants (#SNPs) within genes annotated in the heifer pregnancy QTL of chromosomes (BTA) 5 and 14
Ensembl ID | Gene (#Entrez) | Position* | #SNPs |
|---|---|---|---|
BTA 5 | |||
ENSBTAG00000014411 | TMEM263 (539347) | 70,573,524 – 70,593,134 | 6 |
ENSBTAG00000010144 | MTERF2 (782988) | 70,596,429 – 70,602,003 | 6 |
ENSBTAG00000010149 | CRY1 (535947) | 70,606,115 – 70,701,030 | 8 |
ENSBTAG00000037306 | – | 70,793,315 – 70,793,420 | 1 |
ENSBTAG00000027064 | BTBD11 (539986) | 70,923,456 – 71,257,389 | 111 |
ENSBTAG00000004654 | PWP1 (514147) | 71,280,815 – 71,300,027 | 1 |
ENSBTAG00000012999 | PRDM4 (540731) | 71,324,566 – 71,347,630 | 1 |
ENSBTAG00000011070 | RTCB (525106) | 71,366,686 – 71,388,046 | 1 |
ENSBTAG00000011071 | BPIFC (516784) | 71,391,550 – 71,427,743 | 1 |
ENSBTAG00000020636 | SYN3 (100138309) | 71,475,847 – 71,926,718 | 19 |
ENSBTAG00000021953 | LARGE1 (506466) | 72,157,229 – 72,769,395 | 47 |
BTA 14 | |||
ENSBTAG00000040351 | – | 20,717,785 – 20,720,429 | 2 |
ENSBTAG00000044106 | SPIDR (512910) | 20,740,960 – 20,987,465 | 197 |
ENSBTAG00000017016 | H3F3C (512741) | 21,033,277 – 21,034,329 | 1 |
ENSBTAG00000017019 | PRKDC (512740) | 21,038,513 – 21,164,037 | 197 |
ENSBTAG00000046325 | – | 21,164,873 – 21,192,165 | 6 |
ENSBTAG00000023218 | UBE2V2 (286803) | 21,225,303 – 21,245,522 | 10 |
ENSBTAG00000008693 | EFCAB1 (505272) | 21,456,452 – 21,464,699 | 16 |
ENSBTAG00000038286 | PPDPFL (100126183) | 21,617,777 – 21,622,267 | 11 |
ENSBTAG00000002448 | SNTG1 (517353) | 22,212,868 – 22,350,058 | 334 |
ENSBTAG00000017492 | PCMTD1 (521261) | 22,669,363 – 22,717,576 | 2 |
ENSBTAG00000005560 | ST18 (536336) | 22,815,477 – 22,872,779 | 10 |
ENSBTAG00000000878 | RB1CC1 (539858) | 23,147,992 – 23,177,073 | 26 |
ENSBTAG00000000914 | OPRK1 (540519) | 23,373,836 – 23,395,443 | 8 |
ENSBTAG00000003450 | ATP6V1H (282657) | 23,511,301 – 23,558,678 | 66 |
ENSBTAG00000003454 | RGS20 (614441) | 23,561,303 – 23,613,020 | 60 |
ENSBTAG00000003460 | TCEA1 (505722) | 23,620,858 – 23,637,730 | 7 |
ENSBTAG00000004243 | LYPLA1 (539992) | 23,651,477 – 23,668,800 | 16 |
ENSBTAG00000011203 | RP1 (280916) | 23,990,193 – 23,999,338 | 6 |
ENSBTAG00000047303 | – | 24,019,278 – 24,100,855 | 38 |
ENSBTAG00000044050 | XKR4 (517598) | 24,295,567 – 24,610,955 | 115 |