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Table 3 Number of the sequenced variants (#SNPs) within genes annotated in the heifer pregnancy QTL of chromosomes (BTA) 5 and 14

From: Fine mapping of genomic regions associated with female fertility in Nellore beef cattle based on sequence variants from segregating sires

Ensembl ID Gene (#Entrez) Position* #SNPs
BTA 5
ENSBTAG00000014411 TMEM263 (539347) 70,573,524 – 70,593,134 6
ENSBTAG00000010144 MTERF2 (782988) 70,596,429 – 70,602,003 6
ENSBTAG00000010149 CRY1 (535947) 70,606,115 – 70,701,030 8
ENSBTAG00000037306 70,793,315 – 70,793,420 1
ENSBTAG00000027064 BTBD11 (539986) 70,923,456 – 71,257,389 111
ENSBTAG00000004654 PWP1 (514147) 71,280,815 – 71,300,027 1
ENSBTAG00000012999 PRDM4 (540731) 71,324,566 – 71,347,630 1
ENSBTAG00000011070 RTCB (525106) 71,366,686 – 71,388,046 1
ENSBTAG00000011071 BPIFC (516784) 71,391,550 – 71,427,743 1
ENSBTAG00000020636 SYN3 (100138309) 71,475,847 – 71,926,718 19
ENSBTAG00000021953 LARGE1 (506466) 72,157,229 – 72,769,395 47
BTA 14
ENSBTAG00000040351 20,717,785 – 20,720,429 2
ENSBTAG00000044106 SPIDR (512910) 20,740,960 – 20,987,465 197
ENSBTAG00000017016 H3F3C (512741) 21,033,277 – 21,034,329 1
ENSBTAG00000017019 PRKDC (512740) 21,038,513 – 21,164,037 197
ENSBTAG00000046325 21,164,873 – 21,192,165 6
ENSBTAG00000023218 UBE2V2 (286803) 21,225,303 – 21,245,522 10
ENSBTAG00000008693 EFCAB1 (505272) 21,456,452 – 21,464,699 16
ENSBTAG00000038286 PPDPFL (100126183) 21,617,777 – 21,622,267 11
ENSBTAG00000002448 SNTG1 (517353) 22,212,868 – 22,350,058 334
ENSBTAG00000017492 PCMTD1 (521261) 22,669,363 – 22,717,576 2
ENSBTAG00000005560 ST18 (536336) 22,815,477 – 22,872,779 10
ENSBTAG00000000878 RB1CC1 (539858) 23,147,992 – 23,177,073 26
ENSBTAG00000000914 OPRK1 (540519) 23,373,836 – 23,395,443 8
ENSBTAG00000003450 ATP6V1H (282657) 23,511,301 – 23,558,678 66
ENSBTAG00000003454 RGS20 (614441) 23,561,303 – 23,613,020 60
ENSBTAG00000003460 TCEA1 (505722) 23,620,858 – 23,637,730 7
ENSBTAG00000004243 LYPLA1 (539992) 23,651,477 – 23,668,800 16
ENSBTAG00000011203 RP1 (280916) 23,990,193 – 23,999,338 6
ENSBTAG00000047303 24,019,278 – 24,100,855 38
ENSBTAG00000044050 XKR4 (517598) 24,295,567 – 24,610,955 115
  1. #Entrez = Entrez gene ID; Position = gene start and end position in base pair; * = position based on UMD 3.1 assembly.