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Table 9 Effect of the dietary supplementations of antibiotic on the transcriptomic profile of jejunum mucosa of weaned piglet 14 days after the Escherichia coli F4ac challenge

From: Bacillus sp. probiotic supplementation diminish the Escherichia coli F4ac infection in susceptible weaned pigs by influencing the intestinal immune response, intestinal microbiota and blood metabolomics

Name of the enriched gene set

Size, No. of genes

NES

P-value

FDR, q

Gene sets enriched in AB respect to COa

 LYMPHOCYTE_ACTIVATION

50

2.22

< 0.001

< 0.001

 LEUKOCYTE_ACTIVATION

56

2.2

< 0.001

< 0.001

 IMMUNE_SYSTEM_PROCESS

260

2.17

< 0.001

< 0.001

 IMMUNE_RESPONSE

182

2.3

< 0.001

< 0.001

 CELLULAR_DEFENSE_RESPONSE

36

2.23

< 0.001

< 0.001

 T_CELL_ACTIVATION

38

2.02

< 0.001

< 0.001

 CELL_ACTIVATION

61

2.05

< 0.001

< 0.001

 LYMPHOCYTE_DIFFERENTIATION

23

2.02

< 0.001

< 0.001

 DEFENSE_RESPONSE

183

1.96

< 0.001

0.01

 B_CELL_ACTIVATION

16

1.92

< 0.001

0.01

 REGULATION_OF_IMMUNE_SYSTEM_PROCESS

53

1.88

< 0.001

0.02

 POSITIVE_REGULATION_OF_IMMUNE_SYSTEM_PROCESS

42

1.87

< 0.001

0.02

 HEMOPOIETIC_OR_LYMPHOID_ORGAN_DEVELOPMENT

67

1.86

< 0.001

0.02

 LEUKOCYTE_DIFFERENTIATION

33

1.86

< 0.001

0.02

 INTERLEUKIN_RECEPTOR_ACTIVITY

17

1.84

0.003

0.03

 INTERLEUKIN_BINDING

22

1.82

0.003

0.03

 T_CELL_DIFFERENTIATION

15

1.82

0.005

0.03

 REGULATION_OF_LYMPHOCYTE_ACTIVATION

30

1.82

< 0.001

0.03

 IMMUNE_SYSTEM_DEVELOPMENT

70

1.83

< 0.001

0.03

 PROTEIN_KINASE_CASCADE

227

1.81

< 0.001

0.03

Gene sets enriched in CO respect to ABa

 AMINE_TRANSMEMBRANE_TRANSPORTER_ACTIVITY

32

−2.2

< 0.001

0.01

 L_AMINO_ACID_TRANSMEMBRANE_TRANSPORTER_ACTIVITY

15

−2

< 0.001

0.05

 CARBOXYLIC_ACID_TRANSMEMBRANE_TRANSPORTER_ACTIVITY

35

−2

< 0.001

0.05

  1. aAB Antibiotic, CO Control