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Table 8 Effect of the dietary supplementations of Bacillus subtilis DSM25841 on the transcriptomic profile of jejunum mucosa of weaned piglet 14 days after the Escherichia coli F4ac challenge

From: Bacillus sp. probiotic supplementation diminish the Escherichia coli F4ac infection in susceptible weaned pigs by influencing the intestinal immune response, intestinal microbiota and blood metabolomics

Name of the enriched gene set

Size, No. of genes

NES

P-value

FDR, q

Gene sets enriched in BAS respect to COa

 RHODOPSIN_LIKE_RECEPTOR_ACTIVITY

97

2.66

< 0.001

< 0.001

 MONOVALENT_INORGANIC_CATION_TRANSPORT

72

2.49

< 0.001

< 0.001

 SODIUM_ION_TRANSPORT

17

2.43

< 0.001

< 0.001

 CELL_CELL_SIGNALING

309

2.4

< 0.001

< 0.001

 CATION_CHANNEL_ACTIVITY

90

2.37

< 0.001

< 0.001

 SUBSTRATE_SPECIFIC_CHANNEL_ACTIVITY

119

2.3

< 0.001

< 0.001

 ION_CHANNEL_ACTIVITY

112

2.27

< 0.001

< 0.001

 G_PROTEIN_COUPLED_RECEPTOR_ACTIVITY

140

2.25

< 0.001

< 0.001

 HORMONE_ACTIVITY

35

2.2

< 0.001

0.01

 RESPONSE_TO_BACTERIUM

22

2.19

< 0.001

0.01

 CYCLIC_NUCLEOTIDE_MEDIATED_SIGNALING

81

2.17

< 0.001

0.01

 PEPTIDE_RECEPTOR_ACTIVITY

36

2.16

< 0.001

0.01

 G_PROTEIN_SIGNALING_COUPLED_TO_CYCLIC_NUCLEOTIDE _SECOND_MESSENGER

79

2.14

< 0.001

0.01

 VOLTAGE_GATED_CATION_CHANNEL_ACTIVITY

52

2.13

< 0.001

0.01

 INORGANIC_ANION_TRANSPORT

16

2.13

0.005

0.01

 GATED_CHANNEL_ACTIVITY

95

2.12

< 0.001

0.01

 POTASSIUM_ION_TRANSPORT

45

2.11

< 0.001

0.01

 VOLTAGE_GATED_POTASSIUM_CHANNEL_COMPLEX

32

2.08

< 0.001

0.01

 G_PROTEIN_SIGNALING_COUPLED_TO_CAMP_NUCLEOTIDE_SECOND_MESSENGER

51

2.08

< 0.001

0.01

 CATION_TRANSPORT

119

2.07

< 0.001

0.01

Gene sets enriched in CO respect to BASa

 MICROTUBULE_ORGANIZING_CENTER

47

−2.2

< 0.001

< 0.001

 CENTROSOME

39

−2.2

< 0.001

< 0.001

 MRNA_METABOLIC_PROCESS

55

−2.1

< 0.001

< 0.001

 LIGASE_ACTIVITY_FORMING_CARBON_NITROGEN_BONDS

56

−2.1

< 0.001

< 0.001

 NUCLEOPLASM

227

−2.1

< 0.001

< 0.001

 ACID_AMINO_ACID_LIGASE_ACTIVITY

46

−2.1

< 0.001

< 0.001

 MICROTUBULE_CYTOSKELETON

110

− 2.1

< 0.001

< 0.001

 LIGASE_ACTIVITY

82

−2

< 0.001

< 0.001

 NUCLEOPLASM_PART

170

−2

< 0.001

< 0.001

 RNA_PROCESSING

125

−2

< 0.001

< 0.001

 DNA_DIRECTED_RNA_POLYMERASEII_HOLOENZYME

51

−2

< 0.001

< 0.001

 SMALL_CONJUGATING_PROTEIN_LIGASE_ACTIVITY

40

−2

< 0.001

< 0.001

 MITOSIS

68

−2

< 0.001

< 0.001

 M_PHASE_OF_MITOTIC_CELL_CYCLE

71

−2

< 0.001

< 0.001

 MRNA_PROCESSING_GO_0006397

47

−2

< 0.001

< 0.001

 CHROMOSOMAL_PART

73

−2

< 0.001

< 0.001

 CHROMOSOME_ORGANIZATION_AND_BIOGENESIS

97

−2

< 0.001

< 0.001

 CHROMOSOME

94

−2

< 0.001

< 0.001

 NUCLEAR_LUMEN

310

−2

< 0.001

< 0.001

 CELL_CYCLE_PROCESS

154

−2

< 0.001

< 0.001

  1. a BAS B. subtilis DSM25841, CO Control