Table 1 Average recombination rate (SD) across all the 0.5-Mb windows in each chromosome of white (WL) and brown (BL) layers
GGA | Length, | WL | BL | ||||||
|---|---|---|---|---|---|---|---|---|---|
Mba | #SNP | Average | Male | Female | #SNP | Average | Male | Female | |
1 | 195.28 | 32,062 | 0.013 (0.0070) | 0.012 (0.0057) | 0.014 (0.0081) | 4874 | 0.014 (0.0096) | 0.013 (0.0088) | 0.014 (0.0085) |
2 | 148.81 | 20,372 | 0.0047 (0.0079) | 0.0075 (0.0052) | 0.0084 (0.0071) | 3787 | 0.010 (0.0076) | 0.012 (0.0074) | 0.013 (0.0083) |
3 | 110.45 | 18,370 | 0.0075 (0.010) | 0.011 (0.0035) | 0.016 (0.0072) | 2725 | 0.011 (0.0096) | 0.013 (0.0084) | 0.014 (0.094) |
4 | 90.22 | 14,496 | 0.0062 (0.0082) | 0.0088 (0.0045) | 0.012 (0.0073) | 2279 | 0.011 (0.0091) | 0.013 (0.0080) | 0.013 (0.084) |
5 | 59.58 | 10,448 | 0.0074 (0.0083) | 0.010 (0.0056) | 0.015 (0.0085) | 1513 | 0.014 (0.0094) | 0.016 (0.0087) | 0.016 (0.088) |
6 | 34.95 | 8548 | 0.0095 (0.0095) | 0.014 (0.0061) | 0.015 (0.0071) | 864 | 0.013 (0.010) | 0.015 (0.0086) | 0.016 (0.0090) |
7 | 36.25 | 6980 | 0.0013 (0.0038) | 0.00035 (0.00056) | 0.00069 (0.00086) | 957 | 0.014 (0.009) | 0.016 (0.010) | 0.016 (0.010) |
8 | 28.76 | 4678 | 0.0054 (0.0067) | 0.0073 (0.0053) | 0.0099 (0.0072) | 681 | 0.016 (0.0015) | 0.019 (0.018) | 0.019 (0.016) |
9 | 23.44 | 7237 | 0.0092 (0.0093) | 0.012 (0.0058) | 0.021 (0.0087) | 605 | 0.018 (0.0014) | 0.020 (0.013) | 0.019 (0.015) |
10 | 19.91 | 6248 | 0.012 (0.012) | 0.016 (0.0067) | 0.026 (0.014) | 530 | 0.019 (0.014) | 0.021 (0.011) | 0.022 (0.013) |
11 | 19.40 | 3845 | 0.0049 (0.0086) | 0.0062 (0.0048) | 0.0096 (0.0064) | 507 | 0.015 (0.012) | 0.016 (0.0097) | 0.016 (0.0096) |
12 | 19.90 | 4677 | 0.0053 (0.0078) | 0.0057 (0.0069) | 0.0062 (0.0069) | 430 | 0.017 (0.012) | 0.020 (0.011) | 0.022 (0.013) |
13 | 17.76 | 4062 | 0.0070 (0.0089) | 0.0091 (0.0067) | 0.014 (0.0089) | 435 | 0.017 (0.011) | 0.019 (0.011) | 0.020 (0.011) |
14 | 15.16 | 4043 | 0.010 (0.011) | 0.013 (0.0091) | 0.019 (0.013) | 320 | 0.019 (0.017) | 0.022 (0.015) | 0.023 (0.018) |
15 | 12.66 | 3265 | 0.0068 (0.011) | 0.0098 (0.0072) | 0.012 (0.0086) | 298 | 0.020 (0.015) | 0.024 (0.016) | 0.024 (0.018) |
16 | 0.54 | 21 | 0 | 0 | 0 | 10 | 0 | 0 | 0 |
17 | 10.45 | 1962 | 0.0082 (0.010) | 0.094 (0.0090) | 0.015 (0.015) | 254 | 0.022 (0.015) | 0.023 (0.016) | 0.024 (0.017) |
18 | 11.22 | 3244 | 0.012 (0.014) | 0.016 (0.012) | 0.019 (0.017) | 261 | 0.023 (0.016) | 0.026 (0.015) | 0.025 (0.018) |
19 | 9.98 | 2675 | 0.0018 (0.0030) | 0.00068 (0.00078) | 0.0057 (0.0065) | 284 | 0.026 (0.015) | 0.028 (0.015) | 0.028 (0.017) |
20 | 14.30 | 2162 | 0.0069 (0.0074) | 0.0075 (0.0069) | 0.010 (0.0078) | 338 | 0.019 (0.013) | 0.022 (0.013) | 0.022 (0.014) |
21 | 6.80 | 2439 | 0.016 (0.020) | 0.023 (0.018) | 0.023 (0.022) | 206 | 0.034 (0.022) | 0.037 (0.026) | 0.035 (0.024) |
22 | 4.08 | 929 | 0.00060 (0.0011) | 0.00011 (0.00025) | 0.00033 (0.0010) | 73 | 0.023 (0.019) | 0.024 (0.031) | 0.025 (0.021) |
23 | 5.72 | 1828 | 0.019 (0.020) | 0.023 (0.022) | 0.033 (0.033) | 123 | 0.039 (0.021) | 0.044 (0.022) | 0.045 (0.029) |
24 | 6.32 | 2320 | 0.015 (0.014) | 0.018 (0.014) | 0.022 (0.017) | 180 | 0.037 (0.022) | 0.043 (0.028) | 0.041 (0.025) |
25 | 2.19 | 556 | 0.0052 (0.011) | 0.0031 (0.0063) | 0.0066 (0.013) | 36 | 0.036 (0.030) | 0.044 (0.031) | 0.043 (0.032) |
26 | 5.33 | 1941 | 0.015 (0.016) | 0.016 (0.012) | 0.027 (0.025) | 132 | 0.047 (0.027) | 0.050 (0.031) | 0.050 (0.031) |
27 | 5.21 | 1918 | 0.025 (0.031) | 0.032 (0.034) | 0.024 (0.031) | 111 | 0.023 (0.019) | 0.028 (0.037) | 0.029 (0.031) |
28 | 4.74 | 1297 | 0.0035 (0.0073) | 0.0020 (0.0037) | 0.0049 (0.0085) | 143 | 0.032 (0.032) | 0.041 (0.036) | 0.036 (0.034) |