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Table 1 Average recombination rate (SD) across all the 0.5-Mb windows in each chromosome of white (WL) and brown (BL) layers

From: Identification of recombination hotspots and quantitative trait loci for recombination rate in layer chickens

GGA Length, WL BL
  Mba #SNP Average Male Female #SNP Average Male Female
1 195.28 32,062 0.013 (0.0070) 0.012 (0.0057) 0.014 (0.0081) 4874 0.014 (0.0096) 0.013 (0.0088) 0.014 (0.0085)
2 148.81 20,372 0.0047 (0.0079) 0.0075 (0.0052) 0.0084 (0.0071) 3787 0.010 (0.0076) 0.012 (0.0074) 0.013 (0.0083)
3 110.45 18,370 0.0075 (0.010) 0.011 (0.0035) 0.016 (0.0072) 2725 0.011 (0.0096) 0.013 (0.0084) 0.014 (0.094)
4 90.22 14,496 0.0062 (0.0082) 0.0088 (0.0045) 0.012 (0.0073) 2279 0.011 (0.0091) 0.013 (0.0080) 0.013 (0.084)
5 59.58 10,448 0.0074 (0.0083) 0.010 (0.0056) 0.015 (0.0085) 1513 0.014 (0.0094) 0.016 (0.0087) 0.016 (0.088)
6 34.95 8548 0.0095 (0.0095) 0.014 (0.0061) 0.015 (0.0071) 864 0.013 (0.010) 0.015 (0.0086) 0.016 (0.0090)
7 36.25 6980 0.0013 (0.0038) 0.00035 (0.00056) 0.00069 (0.00086) 957 0.014 (0.009) 0.016 (0.010) 0.016 (0.010)
8 28.76 4678 0.0054 (0.0067) 0.0073 (0.0053) 0.0099 (0.0072) 681 0.016 (0.0015) 0.019 (0.018) 0.019 (0.016)
9 23.44 7237 0.0092 (0.0093) 0.012 (0.0058) 0.021 (0.0087) 605 0.018 (0.0014) 0.020 (0.013) 0.019 (0.015)
10 19.91 6248 0.012 (0.012) 0.016 (0.0067) 0.026 (0.014) 530 0.019 (0.014) 0.021 (0.011) 0.022 (0.013)
11 19.40 3845 0.0049 (0.0086) 0.0062 (0.0048) 0.0096 (0.0064) 507 0.015 (0.012) 0.016 (0.0097) 0.016 (0.0096)
12 19.90 4677 0.0053 (0.0078) 0.0057 (0.0069) 0.0062 (0.0069) 430 0.017 (0.012) 0.020 (0.011) 0.022 (0.013)
13 17.76 4062 0.0070 (0.0089) 0.0091 (0.0067) 0.014 (0.0089) 435 0.017 (0.011) 0.019 (0.011) 0.020 (0.011)
14 15.16 4043 0.010 (0.011) 0.013 (0.0091) 0.019 (0.013) 320 0.019 (0.017) 0.022 (0.015) 0.023 (0.018)
15 12.66 3265 0.0068 (0.011) 0.0098 (0.0072) 0.012 (0.0086) 298 0.020 (0.015) 0.024 (0.016) 0.024 (0.018)
16 0.54 21 0 0 0 10 0 0 0
17 10.45 1962 0.0082 (0.010) 0.094 (0.0090) 0.015 (0.015) 254 0.022 (0.015) 0.023 (0.016) 0.024 (0.017)
18 11.22 3244 0.012 (0.014) 0.016 (0.012) 0.019 (0.017) 261 0.023 (0.016) 0.026 (0.015) 0.025 (0.018)
19 9.98 2675 0.0018 (0.0030) 0.00068 (0.00078) 0.0057 (0.0065) 284 0.026 (0.015) 0.028 (0.015) 0.028 (0.017)
20 14.30 2162 0.0069 (0.0074) 0.0075 (0.0069) 0.010 (0.0078) 338 0.019 (0.013) 0.022 (0.013) 0.022 (0.014)
21 6.80 2439 0.016 (0.020) 0.023 (0.018) 0.023 (0.022) 206 0.034 (0.022) 0.037 (0.026) 0.035 (0.024)
22 4.08 929 0.00060 (0.0011) 0.00011 (0.00025) 0.00033 (0.0010) 73 0.023 (0.019) 0.024 (0.031) 0.025 (0.021)
23 5.72 1828 0.019 (0.020) 0.023 (0.022) 0.033 (0.033) 123 0.039 (0.021) 0.044 (0.022) 0.045 (0.029)
24 6.32 2320 0.015 (0.014) 0.018 (0.014) 0.022 (0.017) 180 0.037 (0.022) 0.043 (0.028) 0.041 (0.025)
25 2.19 556 0.0052 (0.011) 0.0031 (0.0063) 0.0066 (0.013) 36 0.036 (0.030) 0.044 (0.031) 0.043 (0.032)
26 5.33 1941 0.015 (0.016) 0.016 (0.012) 0.027 (0.025) 132 0.047 (0.027) 0.050 (0.031) 0.050 (0.031)
27 5.21 1918 0.025 (0.031) 0.032 (0.034) 0.024 (0.031) 111 0.023 (0.019) 0.028 (0.037) 0.029 (0.031)
28 4.74 1297 0.0035 (0.0073) 0.0020 (0.0037) 0.0049 (0.0085) 143 0.032 (0.032) 0.041 (0.036) 0.036 (0.034)
  1. aChromosome sizes based on galGal4 from UCSC website (https://genome.ucsc.edu)