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Table 5 Heterozygosity (He), effective allele number (Ne), and polymorphism information content (PIC) for each SNP and breed

From: Single nucleotide polymorphisms in candidate genes are significantly associated with resistance to Haemonchus contortus infection in goats

SNP

Parameter

Goat breeds

YCW 32

NJY 56

ESB

37

CCB

155

BBG

227

CIITA_161_C > T

He

0.03

0.02

0.00

0.06

0.00

Ne

1.03

1.02

1.00

1.06

1.00

PIC

0.03

0.02

0.00

0.06

0.00

CIITA_481_A > T

He

0.03

0.02

0.05

0.05

0.01

Ne

1.03

1.02

1.05

1.05

1.01

PIC

0.03

0.02

0.05

0.05

0.01

HSPA8_1024_A > G

He

0.19

0.32

0.10

0.36

0.27

Ne

1.23

1.46

1.11

1.55

1.38

PIC

0.17

0.27

0.10

0.29

0.24

HSPA8_1064_A > G

He

0.17

0.32

0.10

0.36

0.29

Ne

1.20

1.46

1.12

1.56

1.40

PIC

0.16

0.27

0.1

0.29

0.25

ESYT1_559_G > C

He

0.34

0.17

0.15

0.30

0.21

Ne

1.52

1.20

1.18

1.44

1.26

PIC

0.28

0.15

0.14

0.26

0.19

STAT5B_197_A > G

He

0.50

0.48

0.49

0.49

0.49

Ne

2.00

1.92

1.96

2.00

1.97

PIC

0.38

0.36

0.37

0.37

0.37

SERPING1_312_C > T

He

0.45

0.39

0.41

0.41

0.28

Ne

1.82

1.65

1.68

1.69

1.39

PIC

0.35

0.32

0.32

0.33

0.24

SERPING1_615_G > T

He

0.45

0.40

0.41

0.41

0.28

Ne

1.82

1.66

1.68

1.69

1.39

PIC

0.35

0.32

0.32

0.33

0.24

ATP2A3 _150_A > G

He

0.44

0.49

0.49

0.46

0.23

Ne

1.79

1.96

1.98

1.86

1.30

PIC

0.34

0.37

0.37

0.36

0.21

ATP2A3_680_A > C

He

0.44

0.49

0.49

0.45

0.19

Ne

1.79

1.96

1.98

1.83

1.24

PIC

0.34

0.37

0.37

0.35

0.18

  1. Numbers of goats in each breed are shown in parentheses under the breed designation
  2. YCW Yichang White, NJY Nanjiang Yellow, ESB Enshi Black, CCB Chinese crossbred, BBG Black Bengal Goat
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Journal of Animal Science and Biotechnology

ISSN: 2049-1891