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Table 5 Heterozygosity (He), effective allele number (Ne), and polymorphism information content (PIC) for each SNP and breed

From: Single nucleotide polymorphisms in candidate genes are significantly associated with resistance to Haemonchus contortus infection in goats

SNP Parameter Goat breeds
YCW 32 NJY 56 ESB
37
CCB
155
BBG
227
CIITA_161_C > T He 0.03 0.02 0.00 0.06 0.00
Ne 1.03 1.02 1.00 1.06 1.00
PIC 0.03 0.02 0.00 0.06 0.00
CIITA_481_A > T He 0.03 0.02 0.05 0.05 0.01
Ne 1.03 1.02 1.05 1.05 1.01
PIC 0.03 0.02 0.05 0.05 0.01
HSPA8_1024_A > G He 0.19 0.32 0.10 0.36 0.27
Ne 1.23 1.46 1.11 1.55 1.38
PIC 0.17 0.27 0.10 0.29 0.24
HSPA8_1064_A > G He 0.17 0.32 0.10 0.36 0.29
Ne 1.20 1.46 1.12 1.56 1.40
PIC 0.16 0.27 0.1 0.29 0.25
ESYT1_559_G > C He 0.34 0.17 0.15 0.30 0.21
Ne 1.52 1.20 1.18 1.44 1.26
PIC 0.28 0.15 0.14 0.26 0.19
STAT5B_197_A > G He 0.50 0.48 0.49 0.49 0.49
Ne 2.00 1.92 1.96 2.00 1.97
PIC 0.38 0.36 0.37 0.37 0.37
SERPING1_312_C > T He 0.45 0.39 0.41 0.41 0.28
Ne 1.82 1.65 1.68 1.69 1.39
PIC 0.35 0.32 0.32 0.33 0.24
SERPING1_615_G > T He 0.45 0.40 0.41 0.41 0.28
Ne 1.82 1.66 1.68 1.69 1.39
PIC 0.35 0.32 0.32 0.33 0.24
ATP2A3 _150_A > G He 0.44 0.49 0.49 0.46 0.23
Ne 1.79 1.96 1.98 1.86 1.30
PIC 0.34 0.37 0.37 0.36 0.21
ATP2A3_680_A > C He 0.44 0.49 0.49 0.45 0.19
Ne 1.79 1.96 1.98 1.83 1.24
PIC 0.34 0.37 0.37 0.35 0.18
  1. Numbers of goats in each breed are shown in parentheses under the breed designation
  2. YCW Yichang White, NJY Nanjiang Yellow, ESB Enshi Black, CCB Chinese crossbred, BBG Black Bengal Goat