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Table 4 Genotypic and allelic frequencies and chi-squire tests of HWE genotypic frequencies for each SNP in Chinese and Bangladeshi goats

From: Single nucleotide polymorphisms in candidate genes are significantly associated with resistance to Haemonchus contortus infection in goats

SNP Chinese goats Bangladeshi goats
Genotypic frequencies Allele frequencies P-value for χ2
test of HWE
Genotypic frequencies Allele frequencies P-value for χ2
test of HWE
CIITA_161_C > T CC TC TT C 0.98 0.006 CC TC TT C 1.00 0.0001
0.97 0.03 0.01 T 0.02 1 0 0 T 0.00
CIITA_481_A > T AA AT TT A 0.02 0.006 AA AT TT A 0.01 0.0001
0.01 0.02 0.97 T 0.98 0.004 0..004 0.99 T 0.99
HSPA8_1024_A > G AA AG GG A 0.19 0.034 AA AG GG A 0.16 0.61
0.05 0.26 0.69 G 0.81 0.02 0.28 0.70 G 0.84
HSPA8_1064_A > G AA AG GG A 0.80 0.04 AA AG GG A 0.83 0.17
0.68 0.27 0.05 G 0.20 0.69 0.29 0.02 G 0.17
ESYT1_559_G > C CC GC GG C 0.16 0.0003 CC GC GG C 0.12 0.88
0.05 0.19 0.76 G 0.84 0.02 0.20 0.78 G 0.88
STAT5B_197_A > G AA AG GG A 0.49 0.03 AA AG GG A 0.56 0.62
0.27 0.43 0.30 G 0.51 0.32 0.48 0.20 G 0.44
SERPING1_312_C > T CC TC TT C 0.71 0.68 CC TC TT C 0.83 0.09
0.50 0.42 0.08 T 0.29 0.66 0.33 0.01 T 0.17
SERPING1_615_G > T GG GT TT G 0.76 0.66 GG GT TT G 0.84 0.09
0.52 0.40 0.08 T 0.24 0.67 0.31 0.02 T 0.16
ATP2A3_150_A > G AA AG GG A 0.38 0.62 AA AG GG A 0.13 0.0001
0.16 0.44 0.40 G 0.62 0.06 0.15 0.79 G 0.87
ATP2A3_680_A > C AA AC CC A 0.63 0.45 AA AC CC A 0.89 0.83
0.40 0.45 0.15 C 0.37 0.80 0.19 0.01 C 0.11
  1. HWE Hardy-Weinberg equilibrium, χ2 Chi-squire