Journal of Animal Science and Biotechnology

Table 4 Genotypic and allelic frequencies and chi-squire tests of HWE genotypic frequencies for each SNP in Chinese and Bangladeshi goats

From: Single nucleotide polymorphisms in candidate genes are significantly associated with resistance to Haemonchus contortus infection in goats

SNP	Chinese goats						Bangladeshi goats
SNP	Genotypic frequencies			Allele frequencies		P-value for χ² test of HWE	Genotypic frequencies			Allele frequencies		P-value for χ² test of HWE
CIITA_161_C > T	CC	TC	TT	C	0.98	0.006	CC	TC	TT	C	1.00	0.0001
CIITA_161_C > T	0.97	0.03	0.01	T	0.02	0.006	1	0	0	T	0.00	0.0001
CIITA_481_A > T	AA	AT	TT	A	0.02	0.006	AA	AT	TT	A	0.01	0.0001
CIITA_481_A > T	0.01	0.02	0.97	T	0.98	0.006	0.004	0..004	0.99	T	0.99	0.0001
HSPA8_1024_A > G	AA	AG	GG	A	0.19	0.034	AA	AG	GG	A	0.16	0.61
HSPA8_1024_A > G	0.05	0.26	0.69	G	0.81	0.034	0.02	0.28	0.70	G	0.84	0.61
HSPA8_1064_A > G	AA	AG	GG	A	0.80	0.04	AA	AG	GG	A	0.83	0.17
HSPA8_1064_A > G	0.68	0.27	0.05	G	0.20	0.04	0.69	0.29	0.02	G	0.17	0.17
ESYT1_559_G > C	CC	GC	GG	C	0.16	0.0003	CC	GC	GG	C	0.12	0.88
ESYT1_559_G > C	0.05	0.19	0.76	G	0.84	0.0003	0.02	0.20	0.78	G	0.88	0.88
STAT5B_197_A > G	AA	AG	GG	A	0.49	0.03	AA	AG	GG	A	0.56	0.62
STAT5B_197_A > G	0.27	0.43	0.30	G	0.51	0.03	0.32	0.48	0.20	G	0.44	0.62
SERPING1_312_C > T	CC	TC	TT	C	0.71	0.68	CC	TC	TT	C	0.83	0.09
SERPING1_312_C > T	0.50	0.42	0.08	T	0.29	0.68	0.66	0.33	0.01	T	0.17	0.09
SERPING1_615_G > T	GG	GT	TT	G	0.76	0.66	GG	GT	TT	G	0.84	0.09
SERPING1_615_G > T	0.52	0.40	0.08	T	0.24	0.66	0.67	0.31	0.02	T	0.16	0.09
ATP2A3_150_A > G	AA	AG	GG	A	0.38	0.62	AA	AG	GG	A	0.13	0.0001
ATP2A3_150_A > G	0.16	0.44	0.40	G	0.62	0.62	0.06	0.15	0.79	G	0.87	0.0001
ATP2A3_680_A > C	AA	AC	CC	A	0.63	0.45	AA	AC	CC	A	0.89	0.83
ATP2A3_680_A > C	0.40	0.45	0.15	C	0.37	0.45	0.80	0.19	0.01	C	0.11	0.83

HWE Hardy-Weinberg equilibrium, χ² Chi-squire

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ISSN: 2049-1891

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