Table 3 Genotypic and allelic frequencies for each SNP in total population of goats

CIITA_161_C > T

CC

CT

TT

C

0.99

0.98

0.02

0.002

T

0.01

CIITA_481_A > T

AA

AT

TT

A

0.01

0.004

0.02

0.98

T

0.99

HSPA8_1024_A > G

AA

AG

GG

A

0.18

0.04

0.27

0.69

G

0.82

HSPA8_1064_A > G

AA

AG

GG

A

0.80

0.65

0.27

0.04

G

0.20

ESYT1_559_G > C

GG

GC

CC

C

0.14

0.75

0.22

0.03

G

0.86

STAT5B_197_A > G

AA

AG

GG

A

0.52

0.29

0.45

0.26

G

0.48

SERPING1_312_C > T

CC

CT

TT

C

0.76

0.58

0.37

0.05

T

0.24

SERPING1_615_G > T

GG

GT

TT

G

0.74

0.58

0.37

0.05

T

0.24

ATP2A3_150_A > G

AA

AG

GG

A

0.27

0.12

0.31

0.57

G

0.73

ATP2A3_680_A > C

AA

AC

CC

A

0.74

0.58

0.33

0.09

C

0.26