Table 4 Reliabilities of genomic prediction using original GBS (GBS) and corrected GBS (GBSc) data before and after editing genotypes, at four mean depths, averaged over 10 replicates
Reliability (SE) | GBS (after editing genotypes) | GBS (no editing genotypes) | GBSc (after editing genotypes) | GBSc (no editing genotypes) |
|---|---|---|---|---|
Depth = 2 | 0.591 (0.026) | 0.598 (0.023) | 0.603 (0.026) | 0.610 (0.024) |
Depth = 4 | 0.662 (0.025) | 0.663 (0.024) | 0.671 (0.025) | 0.672 (0.024) |
Depth = 5 | 0.678 (0.025) | 0.683 (0.023) | 0.684 (0.025) | 0.687 (0.023) |
Depth = 10 | 0.703 (0.024) | 0.704 (0.024) | 0.704 (0.024) | 0.704 (0.024) |