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Table 2 Simulation parameter of genome

From: Improving genomic predictions by correction of genotypes from genotyping by sequencing in livestock populations

Genome

Value

Number of chromosome

5

Chromosome length

100 Mb

Number of marker loci on one chromosome

1,000,000

Marker position

Evenly

Number of marker alleles in the first HG

2

Marker allele frequencies in the first HG

Random

Number of QTL loci on one chromosome

100

QTL position

Random

Number of QTL allele in the first HG

2

QTL allele frequency in the first HG

Random

QTL allele effect

From gamma distribution with shape 0.4

Maker mutation rate in the historical population

2.5 × 10−5

QTL mutation rate in the historical population

2.5 × 10−5