Microbial Species | Primer Sets (5′→3′) | Product size, bp | References |
---|---|---|---|
Protozoa | F: GCTTTCGWTGGTAGTGTATT; R: CTTGCCCTCYAATCGTWCT | 223 | [47] |
Fungi | F:GAGGAAGTAAAAGTCGTAACAAGGTTTC; R:CAAATTCACAAAGGGTAGGATGATT | 121 | [48] |
Bacteria | F: CGGCAACGAGCGCAACCC; R: CCATTGTAGCACGTGTGTAGCC | 146 | [48] |
Methanogens | F: GGATTAGATACCCSGGTAGT; R: GTTGARTCCAATTAAACCGCA | 192 | [49] |
Selected groups of bacteria | |||
 Fibrobacter succinogenes | F:GTTCGGAATTACTGGGCGTAAA; R: CGCCTGCCCCTGAACTATC | 121 | [48] |
 Ruminococcus albus | F:CCCTAAAAGCAGTCTTAGTTCG; R: CCTCCTTGCGGTTAGAACA | 176 | [50] |
 Ruminococcus flavefaciens | F: GAACGGAGATAATTTGAGTTTACTTAGG; R: CGGTCTCTGTATGTTATGAGGTATTACC | 132 | [48] |
 Selenomonas ruminantium | F: CAATAAGCATTCCGCCTGGG; R: TTCACTCAATGTCAAGCCCTGG | 138 | [51] |